configureCalibration    Reads calibration parameters from an
                        osmose.config list.
getAverageMortality     Computes the average mortality.
getFishingBaseRate      Get fishing base rate.
getFishingBaseRate.byDt
                        Get fishing base rate using time-step rates.
getFishingBaseRate.byYear
                        Get fishing base rate using annual rates.
getFishingBaseRate.constant
                        Get fishing base rate using constant rate
getFishingBaseRate.linear
                        Get fishing base rate using a linear rate
getFishingMortality     Get fishing mortality rate.
getMortality            Get the total mortality rate.
getMortalityDeviation   Computes the mortality deviation. The "proxy",
                        which is removed, can be provided by the user
                        in the "pars" argument.
getOsmoseParameter      Get a parameter from a name chain (error if not
                        found).
getSizeSpectrum         Get size spectrum
getVar                  Get variable
getVar.osmose           GetVar method for osmose objects
osmose-package          OSMOSE: Modelling Marine Exploited Ecosystems
plot.osmose             Plot method for osmose objects
print.osmose            Print informations about Osmose outputs
print.summary.osmose    Print the summary informations about Osmose
                        outputs
readOsmoseConfiguration
                        Reads Osmose configuration files.
readOsmoseFiles         Read Osmose output file
read_osmose             Read OSMOSE outputs into an R object
runOsmose               Run an OSMOSE configuration
summary.osmose          Summarizes informations about Osmose outputs
write.osmose            Write an array or dataframe in the Osmose
                        format. The separator is ";", there are no
                        quotes and a blank column is added for the row
                        names column.
writeFishingFiles       Write fishing files from osmose configuration
                        list.
