pegas-package	pegas-package
all.equal.haploNet	all.equal.haploNet
alleles2loci	alleles2loci
amova	amova
as.igraph.haploNet	haploNet
as.loci	conversion
as.loci.character	conversion
as.loci.data.frame	conversion
as.loci.factor	conversion
as.loci.genind	conversion
as.network.haploNet	haploNet
bind.loci	bind.loci
cbind.loci	bind.loci
diffHaplo	diffHaplo
dist.asd	dist.snp
dist.hamming	dist.hamming
dist.haplotype.loci	haplotype.loci
dist.snp	dist.snp
edit.loci	edit.loci
expand.genotype	utilities
Fst	Fst
genind2loci	conversion
geod	geod
geoTrans	geoTrans
getAlleles	utilities
getGenotypes	utilities
getINFO	VCFloci
getPhi	amova
getPloidy	utilities
H	heterozygosity
hap.div	hap.div
hap.div.DNAbin	hap.div
hap.div.haplotype	hap.div
haploFreq	haploFreq
haploNet	haploNet
haplotype	haplotype
haplotype.character	haplotype
haplotype.DNAbin	haplotype
haplotype.loci	haplotype.loci
haplotype.numeric	haplotype
heterozygosity	heterozygosity
hw.test	hw.test
hw.test.genind	hw.test
hw.test.loci	hw.test
is.phased	utilities
is.snp	utilities
is.snp.VCFinfo	VCFloci
jaguar	jaguar
LD	LD
LD2	LD
LDmap	LDscan
LDscan	LDscan
loci	read.loci
loci2genind	conversion
mjn	mjn
MMD	MMD
msn	mst
mst	mst
na.omit.loci	na.omit.loci
nuc.div	nuc.div
nuc.div.DNAbin	nuc.div
nuc.div.haplotype	nuc.div
pegas	pegas-package
plot.haploNet	haploNet
plot.haplotype	haplotype
plot.haplotype.loci	haplotype.loci
plot.spectrum	site.spectrum
plot.summary.loci	summary.loci
plotNetMDS	plotNetMDS
print.amova	amova
print.haploNet	haploNet
print.haplotype	haplotype
print.loci	summary.loci
print.summary.loci	summary.loci
print.VCFinfo	VCFloci
proba.genotype	utilities
R2.test	R2.test
rangePOS	VCFloci
rbind.loci	bind.loci
read.gtx	read.gtx
read.loci	read.loci
read.vcf	read.vcf
replot	replot
rmst	mst
rr.test	rr.test
selectQUAL	VCFloci
site.spectrum	site.spectrum
sort.haplotype	haplotype
subset.haplotype	subset.haplotype
summary.loci	summary.loci
sw	sw
sw.DNAbin	sw
tajima.test	tajima.test
theta.h	theta.h
theta.k	theta.k
theta.msat	theta.msat
theta.s	theta.s
theta.s.default	theta.s
theta.s.DNAbin	theta.s
theta.tree	theta.tree
unphase	utilities
VCFheader	VCFloci
VCFlabels	VCFloci
VCFloci	VCFloci
write.loci	write.loci
write.pegas.amova	amova
[.haplotype	haplotype
[.loci	summary.loci
