Inference Tool for Antibody Haplotype

Documentation for package ‘rabhit’ version 0.1.0.0

rabhit-package	The RAbHIT package
createFullHaplotype	Anchor gene haplotype inference
deletionHeatmap	Graphical output of single chromosome deletions
deletionsByBinom	Double chromosome deletion by relative gene usage
deletionsByVpooled	Single chromosomal D or J gene deletions inferred by the V pooled method
hapDendo	Hierarchical clustering of haplotypes graphical output
hapHeatmap	Graphical output of alleles division by chromosome
HDGERM	Human IGHD germlines
HJGERM	Human IGHJ germlines
HVGERM	Human IGHV germlines
nonReliableVGenes	Detect non reliable gene assignment
plotDeletionsByBinom	Graphical output of double chromosome deletions
plotDeletionsByVpooled	Graphical output for single chromosome D or J gene deletions according to V pooled method
plotHaplotype	Graphical output of an inferred haplotype
rabhit	The RAbHIT package
samplesHaplotype	Example haplotype inference results
samples_db	Example IGH human naive b-cell repertiore