chainsaw                Function to cut phylogeny from present day
                        species to a specified depth.
check_partition         Check partition matrix
check_phypartition      check_phypartition
check_similarity        Check similarity matrix
get_title               Get title
hs_parameters           Historical species parameters
inddiv                  Calculate individual-level diversity
meta_gamma              Metacommunity gamma diversity
metacommunity           Coerce to 'metacommunity'
metacommunity-class     metacommunity-class
metadiv                 Calculate metacommunity-level diversity
norm_alpha              Normalised alpha (low level diversity
                        component)
norm_beta               Normalised beta (low level diversity component)
norm_meta_alpha         Normalised metacommunity alpha diversity
norm_meta_beta          Normalised metacommunity beta diversity
norm_meta_rho           Normalised metacommunity rho diversity
norm_rho                Normalised rho (low level diversity component)
norm_sub_alpha          Normalised subcommunity alpha diversity
norm_sub_beta           Normalised subcommunity beta diversity
norm_sub_rho            Normalised subcommunity rho diversity
phy_abundance           Calculate abundance of historical species
phy_struct              Calculate phylogenetic structure matrix
plot_diversity          Plot diversity
power_mean              Power mean of vector elements
powermean               Calculate power mean
powermean-class         powermean-class
qD                      Hill number / naive diversity with no
                        similarity
qDZ                     Similarity-sensitive diversity
qDZ_single              Similarity-sensitive diversity of a single
                        population
qD_single               Hill number / naive diversity of a single
                        population
raw_alpha               Raw alpha (low level diversity component)
raw_beta                Raw beta (low level diversity component)
raw_gamma               Gamma (low level diversity component)
raw_meta_alpha          Raw metacommunity alpha diversity
raw_meta_beta           Raw metacommunity beta diversity
raw_meta_rho            Raw metacommunity rho diversity
raw_rho                 Raw rho (low level diversity component)
raw_sub_alpha           Raw subcommunity alpha diversity
raw_sub_beta            Raw subcommunity beta diversity
raw_sub_rho             Raw subcommunity rho diversity
rdiversity-package      rdiversity
relativeentropy         Calculate relative entropy
relativeentropy-class   relativeentropy-class
repartition             Repartition metacommunity
similarity_shimatani    Taxonomic similarity matrix
smatrix                 Phylogenetic similarity matrix (ultrametric)
sub_gamma               Subcommunity gamma diversity
subdiv                  Calculate subcommunity-level diversity
summarise               Summary function
tbar                    Calculate T_bar
zmatrix                 Similarity matrix
