bifurcation.diagram     plot of an haplotype bifurcation diagram
calc_ehh                EHH and iHH computations at a given core SNP
calc_ehhs               EHHS and iES computations at a given core SNP
data2haplohh            Converting data into an object of class haplohh
distribplot             Distribution of standardized iHS, Rsb or XP-EHH
                        values
haplohh-class           Class '"haplohh"'
haplohh_cgu_bta12       Example of an 'haplohh' object
ies2rsb                 Compute Rsb (standardized ratio of iES between
                        two populations)
ies2xpehh               Compute XP-EHH (standardized ratio of iES from
                        two populations) as described in Sabeti et al.
                        (2007)
ihh2ihs                 Compute iHS (standardized iHH)
ihsplot                 Plot iHS over a genome
make.example.files      Creating example input files
rehh-package            Searching for footprints of selection using
                        "Extended Haplotype Homozygosity" based
                        statistics
rsbplot                 Plot Rsb over a genome
scan_hh                 Computing EHH based statistics over a whole
                        chromosome
xpehhplot               Plot XP-EHH over a genome
