# Approximately Unbiased P-Values via Multiscale Bootstrap

## Documentation for package ‘scaleboot’ version 0.3-4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

scaleboot-package | Approximately Unbiased P-values via Multiscale Bootstrap
coef.scaleboot | Extract Model Coefficients
coef.scalebootv | Extract Model Coefficients
countw.assmax | Multiscale Bootstrap Resampling
countw.shtest | Multiscale Bootstrap Resampling
countw.shtestass | Multiscale Bootstrap Resampling
interface.scaleboot | Interface to External Packages
lines.scaleboot | Plot Diagnostics for Multiscale Bootstrap
lung73 | Clustering of 73 Lung Tumors
lung73.pvclust | Clustering of 73 Lung Tumors
lung73.sb | Clustering of 73 Lung Tumors
mam105 | Mammal Phylogenetic Analysis for 105 Trees
mam105.ass | Mammal Phylogenetic Analysis for 105 Trees
mam105.mt | Mammal Phylogenetic Analysis for 105 Trees
mam105.relltest | Mammal Phylogenetic Analysis for 105 Trees
mam15 | Mammal Phylogenetic Analysis for 15 Trees
mam15.ass | Mammal Phylogenetic Analysis for 15 Trees
mam15.mt | Mammal Phylogenetic Analysis for 15 Trees
mam15.relltest | Mammal Phylogenetic Analysis for 15 Trees
plot.sbconf | Bootstrap Confidence Intervals
plot.scaleboot | Plot Diagnostics for Multiscale Bootstrap
plot.scalebootv | Plot Diagnostics for Multiscale Bootstrap
plot.summary.scaleboot | Plot Diagnostics for Multiscale Bootstrap
plot.summary.scalebootv | Plot Diagnostics for Multiscale Bootstrap
print.sbconf | Bootstrap Confidence Intervals
print.scaleboot | Fitting Models to Bootstrap Probabilities
print.scalebootv | Fitting Models to Bootstrap Probabilities
print.summary.scaleboot | P-value Calculation for Multiscale Bootstrap
print.summary.scalebootv | P-value Calculation for Multiscale Bootstrap
read.ass | Interface to External Packages
read.cnt | Interface to External Packages
read.mt | Interface to External Packages
relltest | RELL Test for Phylogenetic Inference
sbaic | Akaike's Information Criterion
sbaic.scaleboot | Akaike's Information Criterion
sbaic.scalebootv | Akaike's Information Criterion
sbaic<- | Akaike's Information Criterion
sbaic<-.scaleboot | Akaike's Information Criterion
sbaic<-.scalebootv | Akaike's Information Criterion
sbconf | Bootstrap Confidence Intervals
sbconf.default | Bootstrap Confidence Intervals
sbconf.sbconf | Bootstrap Confidence Intervals
sbfit | Fitting Models to Bootstrap Probabilities
sbfit.data.frame | Fitting Models to Bootstrap Probabilities
sbfit.default | Fitting Models to Bootstrap Probabilities
sbfit.matrix | Fitting Models to Bootstrap Probabilities
sbfit.pvclust | Interface to External Packages
sbfit.scaleboot | Fitting Models to Bootstrap Probabilities
sbfit.scalebootv | Fitting Models to Bootstrap Probabilities
sblegend | Plot Diagnostics for Multiscale Bootstrap
sbmodelnames | Model Specification Functions
sboptions | Options for Multiscale Bootstrap
sbpsi | Model Specification Functions
sbpsi.generic | Model Specification Functions
sbpsi.poly | Model Specification Functions
sbpsi.sing | Model Specification Functions
sbpsi.sphe | Model Specification Functions
sbpval | Extract P-values
sbpval.summary.scaleboot | Extract P-values
sbpval.summary.scalebootv | Extract P-values
sbpvclust | Interface to External Packages
scaleboot | Multiscale Bootstrap Resampling
summary.relltest | RELL Test for Phylogenetic Inference
summary.scaleboot | P-value Calculation for Multiscale Bootstrap
summary.scalebootv | P-value Calculation for Multiscale Bootstrap