Adj.Rand                Adjusted Rand index
Aggregate1              Aggregates by one vector and uses it for row
                        names
Alldups                 Finds all duplicates
BootA                   Bootstrap clustering
BootKNN                 Bootstrap with kNN
BootRF                  Bootstrap with 'randomForest()'
Boxplots                Grouped boxplots
CVs                     Coefficients of variation
Cdate                   System date, time plus easy save history
Cladd                   Adds confidence bands to the simple linear
                        model plots
Co.test                 Correlation test between cophenetic and
                        original distances
Coeff.det               Average coefficients of determination for each
                        variable
Coml                    Compare checklists
Cor                     Correlation matrix with p-values
Cor.vec                 Calculates correlation and converts results
                        into the named long vector
Dev                     Which object is predicted with less accuracy?
Dotchart                Improved dotcharts
Draw.arrow              Add arrow to the plot interactively
Ell                     Plot ellipse
Ellipses                Groups' confidence ellipses
Ex.boxplot              Boxplot explanation
Ex.col                  Examples of colors
Ex.font                 Examples of fonts
Ex.lty                  Examples of line types
Ex.margins              Example of plot margins
Ex.pch                  Point examples
Ex.plots                Examples of plot types
Files                   Textual filesystem browser
Gap.code                Gap coding
Gower.dist              Gower distance
Gradd                   Classification grid
Gridmoon                Draw with 'R'
Hclust.match            Counts matches between two hierarchical
                        clusterings
Histp                   Histogram with percents
Histr                   Histogram with overlaid curve
Hulls                   Groups' hulls
Infill                  Rarefaction curves
Is.tax.inform.char      Taxonomic informativeness
Jclust                  Simple bootstrap and jackknife clustering
K                       Coefficient of divergence
Life                    Game of Life
Linechart               Dotchart-like plot sfor every scaled variable
                        grouped by factor
Ls                      Ls
MDSv                    MDS: explained variance (surrogate)
Mag                     Interpreter for effect sizes
Miney                   Miney game
Misclass                Misclassification (confusion) table
Missing.map             Textual plot of missing data
MrBayes                 Calls MrBayes
Normality               Check normality
Overlap                 Polygons' overlap
Peaks                   Find local maxima
Phyllotaxis             Plant phyllotaxis
Pleiad                  Correlation circles (correlation pleiads)
Plot.phylocl            Plot phylogenetic tree with clades collapsed
PlotBest.dist           Plots dotchart with best base distance method
PlotBest.hclust         Plots dotchart with best clustering method
PlotBest.mdist          Plots dotchart with best distance method, use
                        multiple non-base distances
Ploth                   Changes the appearance of cluster dendrogram
Points                  Number of cases in each location reflected in
                        the point size
R                       Imitation (!) of the modern 'R' logo
Read.fasta              Read 'FASTA' files
Read.tri.nts            Read 'NTSYSpc' files
Recode                  Basic multiple recoding (similar to 'SQL' left
                        join)
Rostova.tbl             Calculates multiple correlation matrices (via
                        'factor1') and stacks them together
Rresults                Rresults shell script
Rro.test                Robust rank order test
Saynodynamite           Say "no" to dynamite plots!
Squares                 Polygons' squares
Str                     'str()' enchanced for data frames
Table2df                Convert table to data frame saving structure
Tobin                   Binarize (make dummy variables)
Toclip                  Insert content to Linux X11 clipboard
Topm                    Stacks correlation matrix
VTcoeffs                Effect sizes of association between categorical
                        variables
Write.fasta             Write 'FASTA' files
Xpager                  Separate terminal pager for Linux
pairwise.Eff            Pairwise table of effects with magnitudes
pairwise.Rro.test       Robust rank order test post hoc derivative
pairwise.Table2.test    Pairwise Chi-squared or Fisher test for
                        2-dimensional tables
plot.nnet               Plots 'nnet' object
