aa_getATestResults	aa_getATestResults
aa_getATestResults_overTime	aa_getATestResults_overTime
aa_graphATestsForSampleSize	aa_graphATestsForSampleSize
aa_graphSampleSizeSummary	aa_graphSampleSizeSummary
aa_sampleSizeSummary	aa_sampleSizeSummary
aa_sampleSizeSummary_overTime	aa_sampleSizeSummary_overTime
aa_summariseReplicateRuns	aa_summariseReplicateRuns
aa_summariseReplicateRuns_overTime	aa_summariseReplicateRuns_overTime
add_parameter_value_to_file	add_parameter_value_to_file
analysenetwork_structures	analysenetwork_structures
append_time_to_argument	append_time_to_argument
atest	atest
a_test_results	a_test_results
build_curve_results_from_r_object	build_curve_results_from_r_object
build_performance_statistics	build_performance_statistics
calculate_atest_score	calculate_atest_score
calculate_fold_MSE	calculate_fold_MSE
calculate_medians_for_all_measures	calculate_medians_for_all_measures
calculate_prccs_all_parameters	calculate_prccs_all_parameters
calculate_prcc_for_all_measures	calculate_prcc_for_all_measures
calculate_weights_for_ensemble_model	calculate_weights_for_ensemble_model
check_acceptable_model_type	check_acceptable_model_type
check_argument_positive_int	check_argument_positive_int
check_boolean	check_boolean
check_column_ranges	check_column_ranges
check_confidence_interval	check_confidence_interval
check_consistency_result_type	check_consistency_result_type
check_double_value_in_range	check_double_value_in_range
check_filepath_exists	check_filepath_exists
check_file_exist	check_file_exist
check_file_exists	check_file_exists
check_file_extension	check_file_extension
check_function_dependent_paramvals	check_function_dependent_paramvals
check_global_param_sampling_args	check_global_param_sampling_args
check_graph_output_type	check_graph_output_type
check_input_args	check_input_args
check_lengths_parameters_ranges	check_lengths_parameters_ranges
check_lhs_algorithm	check_lhs_algorithm
check_list_all_integers	check_list_all_integers
check_nested_filepaths	check_nested_filepaths
check_netlogo_parameters_and_values	check_netlogo_parameters_and_values
check_numeric_list_values	check_numeric_list_values
check_package_installed	check_package_installed
check_parameters_and_ranges	check_parameters_and_ranges
check_paramvals_length_equals_parameter_length	check_paramvals_length_equals_parameter_length
check_robustness_parameter_and_ranges_lengths	check_robustness_parameter_and_ranges_lengths
check_robustness_paramvals_contains_baseline	check_robustness_paramvals_contains_baseline
check_robustness_range_contains_baseline	check_robustness_range_contains_baseline
check_robustness_range_or_values	check_robustness_range_or_values
check_robustness_sampling_args	check_robustness_sampling_args
check_text	check_text
check_text_list	check_text_list
close_and_write_netlogo_file	close_and_write_netlogo_file
compare_all_values_of_parameter_to_baseline	compare_all_values_of_parameter_to_baseline
construct_result_filename	construct_result_filename
createAndEvaluateFolds	createAndEvaluateFolds
createtest_fold	createtest_fold
createTrainingFold	createTrainingFold
create_abc_settings_object	create_abc_settings_object
create_ensemble	create_ensemble
create_neural_network	create_neural_network
dataset_precheck	dataset_precheck
denormalise_dataset	denormalise_dataset
determine_optimal_neural_network_structure	determine_optimal_neural_network_structure
efast_cvmethod	efast_cvmethod
efast_generate_medians_for_all_parameter_subsets	efast_generate_medians_for_all_parameter_subsets
efast_generate_medians_for_all_parameter_subsets_overTime	efast_generate_medians_for_all_parameter_subsets_overTime
efast_generate_sample	efast_generate_sample
efast_generate_sample_netlogo	efast_generate_sample_netlogo
efast_get_overall_medians	efast_get_overall_medians
efast_get_overall_medians_overTime	efast_get_overall_medians_overTime
efast_graph_Results	efast_graph_Results
efast_netlogo_get_overall_medians	efast_netlogo_get_overall_medians
efast_netlogo_run_Analysis	efast_netlogo_run_Analysis
efast_parameterdist	efast_parameterdist
efast_process_netlogo_result	efast_process_netlogo_result
efast_run_Analysis	efast_run_Analysis
efast_run_Analysis_from_DB	efast_run_Analysis_from_DB
efast_run_Analysis_overTime	efast_run_Analysis_overTime
efast_sd	efast_sd
efast_setfreq	efast_setfreq
efast_ttest	efast_ttest
emulated_lhc_values	emulated_lhc_values
emulate_efast_sampled_parameters	emulate_efast_sampled_parameters
emulate_lhc_sampled_parameters	emulate_lhc_sampled_parameters
emulation_algorithm_settings	emulation_algorithm_settings
emulator_parameter_evolution	emulator_parameter_evolution
emulator_predictions	emulator_predictions
ensemble_abc_wrapper	ensemble_abc_wrapper
execute_checks	execute_checks
exemplar_sim_output	exemplar_sim_output
extract_predictions_from_result_list	extract_predictions_from_result_list
format_efast_result_for_output	format_efast_result_for_output
generate_a_test_results_header	generate_a_test_results_header
generate_a_test_score	generate_a_test_score
generate_efast_parameter_sets	generate_efast_parameter_sets
generate_emulators_and_ensemble	generate_emulators_and_ensemble
generate_emulator_model	generate_emulator_model
generate_ensemble_from_existing_emulations	generate_ensemble_from_existing_emulations
generate_ensemble_training_set	generate_ensemble_training_set
generate_headers_for_atest_file	generate_headers_for_atest_file
generate_list_of_checks	generate_list_of_checks
generate_medians_for_param_set	generate_medians_for_param_set
generate_model_formula	generate_model_formula
generate_parameter_table	generate_parameter_table
generate_prcc_results_header	generate_prcc_results_header
generate_predictions_from_emulator	generate_predictions_from_emulator
generate_requested_emulations	generate_requested_emulations
generate_sensitivity_indices	generate_sensitivity_indices
generate_summary_stats_for_all_param_sets	generate_summary_stats_for_all_param_sets
getMediansSubset	getMediansSubset
get_argument_correct_case	get_argument_correct_case
get_correct_file_path_for_function	get_correct_file_path_for_function
get_file_and_object_argument_names	get_file_and_object_argument_names
get_max_and_median_atest_scores	get_max_and_median_atest_scores
get_medians_for_size_subsets	get_medians_for_size_subsets
get_median_results_for_all_measures	get_median_results_for_all_measures
graph_Posteriors_All_Parameters	graph_Posteriors_All_Parameters
graph_sample_size_results	graph_sample_size_results
import_model_result	import_model_result
initialise_netlogo_xml_file	initialise_netlogo_xml_file
join_strings	join_strings
join_strings_nospace	join_strings_nospace
join_strings_space	join_strings_space
kfoldCrossValidation	kfoldCrossValidation
lhc_calculatePRCCForMultipleTimepoints	lhc_calculatePRCCForMultipleTimepoints
lhc_constructcoeff_dataset	lhc_constructcoeff_dataset
lhc_generateLHCSummary	lhc_generateLHCSummary
lhc_generateLHCSummary_overTime	lhc_generateLHCSummary_overTime
lhc_generatePRCoEffs	lhc_generatePRCoEffs
lhc_generatePRCoEffs_db_link	lhc_generatePRCoEffs_db_link
lhc_generatePRCoEffs_overTime	lhc_generatePRCoEffs_overTime
lhc_generateTimepointFiles	lhc_generateTimepointFiles
lhc_generate_lhc_sample	lhc_generate_lhc_sample
lhc_generate_lhc_sample_netlogo	lhc_generate_lhc_sample_netlogo
lhc_generate_netlogo_PRCoEffs	lhc_generate_netlogo_PRCoEffs
lhc_graphMeasuresForParameterChange	lhc_graphMeasuresForParameterChange
lhc_graphMeasuresForParameterChange_from_db	lhc_graphMeasuresForParameterChange_from_db
lhc_graphMeasuresForParameterChange_overTime	lhc_graphMeasuresForParameterChange_overTime
lhc_netlogo_graphMeasuresForParameterChange	lhc_netlogo_graphMeasuresForParameterChange
lhc_plotCoEfficients	lhc_plotCoEfficients
lhc_polarplot	lhc_polarplot
lhc_process_netlogo_result	lhc_process_netlogo_result
lhc_process_sample_run_subsets	lhc_process_sample_run_subsets
lhc_process_sample_run_subsets_overTime	lhc_process_sample_run_subsets_overTime
make_extension	make_extension
make_filename	make_filename
make_graph_title	make_graph_title
make_lhc_plot	make_lhc_plot
make_path	make_path
meanSquaredError	meanSquaredError
normaliseATest	normaliseATest
normalise_dataset	normalise_dataset
nsga2_set_user_params	nsga2_set_user_params
num.decimals	num.decimals
oat_csv_result_file_analysis	oat_csv_result_file_analysis
oat_csv_result_file_analysis_from_DB	oat_csv_result_file_analysis_from_DB
oat_csv_result_file_analysis_overTime	oat_csv_result_file_analysis_overTime
oat_generate_netlogo_behaviour_space_XML	oat_generate_netlogo_behaviour_space_XML
oat_graphATestsForSampleSize	oat_graphATestsForSampleSize
oat_parameter_sampling	oat_parameter_sampling
oat_plotResultDistribution	oat_plotResultDistribution
oat_processParamSubsets	oat_processParamSubsets
oat_processParamSubsets_overTime	oat_processParamSubsets_overTime
oat_process_netlogo_result	oat_process_netlogo_result
output_ggplot_graph	output_ggplot_graph
output_param_sets_per_curve	output_param_sets_per_curve
partition_dataset	partition_dataset
pcor.mat	pcor.mat
pcor.rec	pcor.rec
pcor.test	pcor.test
perform_aTest_for_all_sim_measures	perform_aTest_for_all_sim_measures
plotATestsFromTimepointFiles	plotATestsFromTimepointFiles
ploteFASTSiFromTimepointFiles	ploteFASTSiFromTimepointFiles
plotPRCCSFromTimepointFiles	plotPRCCSFromTimepointFiles
plot_compare_sim_observed_to_model_prediction	plot_compare_sim_observed_to_model_prediction
prepare_parameter_value_list	prepare_parameter_value_list
process_netlogo_parameter_range_info	process_netlogo_parameter_range_info
process_parameter_value_if_exists	process_parameter_value_if_exists
produce_accuracy_plots_all_measures	produce_accuracy_plots_all_measures
produce_accuracy_plots_single_measure	produce_accuracy_plots_single_measure
produce_atest_score_summary	produce_atest_score_summary
produce_summary_for_all_values_of_parameter	produce_summary_for_all_values_of_parameter
read_all_curve_results	read_all_curve_results
read_from_csv	read_from_csv
read_model_result_file	read_model_result_file
read_simulation_results	read_simulation_results
retrieve_results_for_comparison_result_set	retrieve_results_for_comparison_result_set
rSquared	rSquared
sample_parameter_space	sample_parameter_space
scale_lhc_sample	scale_lhc_sample
screen_nsga2_parameters	screen_nsga2_parameters
selectSuitableStructure	selectSuitableStructure
set.nsga_sensitivity_params	set.nsga_sensitivity_params
sim_data_for_emulation	sim_data_for_emulation
summarise_lhc_sweep_responses	summarise_lhc_sweep_responses
summarise_replicate_runs	summarise_replicate_runs
tutorial_consistency_set	tutorial_consistency_set
updateErrorForStructure	updateErrorForStructure
use_ensemble_to_generate_predictions	use_ensemble_to_generate_predictions
visualise_data_distribution	visualise_data_distribution
weight_emulator_predictions_by_ensemble	weight_emulator_predictions_by_ensemble
write_data_to_csv	write_data_to_csv
