Package: starmie
Type: Package
Title: Population Structure Model Inference and Visualisation
Version: 0.1.2
Authors@R: c(person("Gerry", "Tonkin-Hill", email = "tonkin-hill.g@wehi.edu.au", role = c("aut")),
    person( "Stuart", "Lee", email = "lee.s@wehi.edu.au", role = c("cre", "aut")))
Description: Data structures and methods for  manipulating output of genetic population structure clustering algorithms.
  'starmie' can parse output from 'STRUCTURE' (see <https://pritchardlab.stanford.edu/structure.html> for details) or
  'ADMIXTURE' (see <https://www.genetics.ucla.edu/software/admixture/> for details). 'starmie' performs model selection via
  information criterion, and provides functions for MCMC diagnostics, correcting label switching and visualisation of admixture coefficients.
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 3.3.0)
Imports: data.table, readr (>= 1.0.0), stringr, tidyr, purrr, ggplot2
        (>= 2.1.0), iterpc, combinat, label.switching, proxy, MCL,
        gridExtra, ggdendro, ggrepel, MCMCpack, parallel, methods,
        stats
Suggests: testthat, knitr, rmarkdown
URL: https://github.com/sa-lee/starmie
BugReports: https://github.com/sa-lee/starmie/issues
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-11-07 02:05:14 UTC; lee.s
Author: Gerry Tonkin-Hill [aut],
  Stuart Lee [cre, aut]
Maintainer: Stuart Lee <lee.s@wehi.edu.au>
Repository: CRAN
Date/Publication: 2016-11-07 08:12:43
Built: R 3.4.4; ; 2019-04-25 22:24:31 UTC; windows
