admix                   Constructor for admix object
admixList               Contructor for admixList
averagePairWiseSimilarityH
                        Average Q matrices.
averageQ                Average Q matrices.
bestK                   Determine a suitable K value from multiple
                        Structure runs
clumpak                 Run the CLUMPP algorithms.
clumpp                  Run the CLUMPP algorithms.
exampleAdmixture        Example admixture runs
exampleStructure        Example structure objects
getClusterAlleleFreqMat
                        Retrieve estimated within-cluster allele
                        frequencies
getCompleteAlleleFreqMat
                        Retrieve estimated population allele
                        frequencies
getD                    Accessor methods for struct objects
getK                    Retrieve the assumed number of populations from
                        'struct' or 'admix' objects.
getQ                    Retrieve Q matrix from 'struct' or 'admix'
                        objects.
getStephens             Use the Stephen's method to permute sample
                        labels
loadAdmixture           Read Admixture Output
loadStructure           Read Structure Output
plotBar                 Generate a barplot of a Structure or Admixture
                        run.
plotMCMC                Plot STRUCTURE MCMC chains
plotMDS                 Plot principal coordinates from Q-matrix,
                        struct or admix objects
plotMultiK              Generate a barplot for multiple values of K..
plotTreeBar             Generate a barplot of a Structure or Admixture
                        run.
runStructure            Run STRUCTURE in current path
struct                  Constructor for struct object
structList              Constructor for a structList object
