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| cliqueSurvivalTest | Perform survival test on all the cliques of the graph. |
| compPCs | For internal usage only. Compute principal components according to the chosen method. |
| computeDays | Function to compute days. |
| computePCs | For internal usage only. Compute principal components according to the chosen method. |
| exp | Expression dataset. |
| getTopLoadGenes | Extract the relevant genes associated with survival |
| graph | Expression dataset. |
| pathwaySurvivalTest | Survival analysis on the whole pathway |
| sparseCompPCs | For internal usage only. Compute principal components according to the chosen method. |
| survAnnot | Annotations. |
| survCliques | Class '"survCliques"' |
| survCliques-class | Class '"survCliques"' |
| survPath | Class '"survPath"' |
| survPath-class | Class '"survPath"' |
| topoCompPCs | For internal usage only. Compute principal components according to the chosen method. |