# Cost Constrained Flux Balance Analysis (ccFBA): MetabOlic Modeling with ENzyme kineTics (MOMENT)

## Documentation for package ‘sybilccFBA’ version 3.0.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

sybilccFBA-package | Cost Constrained Flux Balance Analysis(ccFBA)
addGlcTrns | add Glucose Transport constraint
calc_MW | Calculate molecular weights
ccFBA | Class '"sysBiolAlg_ccFBA"'
cfba_moment | Function: cfba_moment: implement MOMENT method
cfba_moment_mr | Function: cfba_moment_mr: implement MOMENT method taking into account multifunctional enzymes
cfba_moment_pw | Function: cfba_moment_pw: implement MOMENT method
getccFBA_mat | getccFBA_mat: get ccFBA model as a constraint matrix
getGpr1iso | Choose the the smallest isoenzyme
getRevFlux | get fluxes of reversible model
iAF1260 | Escherichia coli Metabolic Model iAF1260
iJO1366 | Escherichia coli Metabolic Model iJO1366
iML1515 | Escherichia coli Metabolic Model iML1515
iMM904 | Saccharomyces cerevisiae Metabolic Model
initialize-method | Initialize Problem Object
kcat | Escherichia coli KCAT values used in MOMENT method
mw | Escherichia coli molecular weight values used in MOMENT method
mw_iML1515 | SEColi metabolic genes molecular weight values used in MOMENT/ccFBA method
readmodel | read MOMENT model
simulate_EColi | Simulate Ecoli
sybilccFBA | Cost Constrained Flux Balance Analysis(ccFBA)
sysBiolAlg_ccFBA | Class '"sysBiolAlg_ccFBA"'
sysBiolAlg_ccFBA-class | Class '"sysBiolAlg_ccFBA"'
yst_kcat | Saccharomyces cerevisiae KCAT values used in MOMENT method
yst_mw | Saccharomyces cerevisiae molecular weight values used in MOMENT method