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| accessors | Accessors |
| BootCA-class | Partial bootstrap CA |
| boves | Boves ceramics |
| compiegne | Compiegne ceramics |
| CountMatrix | Count matrix |
| CountMatrix-class | Count matrix |
| dateEvent | Date archaeological assemblages |
| dateEvent-method | Date archaeological assemblages |
| DateModel-class | Date model |
| diversity | Heterogeneity and evenness |
| diversity-method | Heterogeneity and evenness |
| evenness | Heterogeneity and evenness |
| evenness-method | Heterogeneity and evenness |
| FrequencyMatrix-class | Frequency matrix |
| IncidenceMatrix | Incidence matrix |
| IncidenceMatrix-class | Incidence matrix |
| matrigraphe | Matrix plot |
| mississippi | Mississippi ceramics |
| OccurrenceMatrix-class | Co-occurrence matrix |
| PermutationOrder-class | Permutation order |
| permute | Matrix seriation |
| permute-method | Matrix seriation |
| plotBar | Bar plot |
| plotBar-method | Bar plot |
| plotDate | Date plot |
| plotDate-method | Date plot |
| plotMatrix | Matrix plot |
| plotMatrix-method | Matrix plot |
| plotRank | Rank vs abundance plot |
| plotRank-method | Rank vs abundance plot |
| plotSpot | Spot plot |
| plotSpot-method | Spot plot |
| rarefaction | Richness and rarefaction |
| rarefaction-method | Richness and rarefaction |
| refine | Matrix seriation |
| refine-method | Matrix seriation |
| richness | Richness and rarefaction |
| richness-method | Richness and rarefaction |
| seriate | Matrix seriation |
| seriate-method | Matrix seriation |
| seriation | Matrix seriation |
| seriographe | Bar plot |
| similarity | Similarity |
| similarity-method | Similarity |
| SimilarityMatrix-class | Similarity matrix |
| totals | Accessors |
| totals-method | Frequency matrix |
| turnover | Turnover |
| turnover-method | Turnover |
| zuni | Zuni ceramics |
| [-method | Partial bootstrap CA |
| [-method | Date model |
| [[-method | Partial bootstrap CA |
| [[-method | Date model |
| [[-method | Permutation order |