# Handling Taxonomic Lists

## Documentation for package ‘taxlist’ version 0.1.6

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

taxlist-package | Handling Taxonomic Lists
$-method | Extract or Replace Parts of taxlist Objects
$<- | Extract or Replace Parts of taxlist Objects
$<--method | Extract or Replace Parts of taxlist Objects
accepted_name | Manage Accepted Names, Synonyms and Basionyms
accepted_name-method | Manage Accepted Names, Synonyms and Basionyms
accepted_name<- | Manage Accepted Names, Synonyms and Basionyms
accepted_name<--method | Manage Accepted Names, Synonyms and Basionyms
add_concept | Retrieve or replace slot taxonRelations in taxlist objects
add_concept-method | Retrieve or replace slot taxonRelations in taxlist objects
add_level | Deprecated Functions
add_parent | Deprecated Functions
add_synonym | Handle Information on Taxon Usage Names
add_synonym-method | Handle Information on Taxon Usage Names
add_trait | Deprecated Functions
add_view | Management of concept views in taxonomic lists.
add_view-method | Management of concept views in taxonomic lists.
as.list | Coerce an S4 Object to a List
as.list-method | Coerce an S4 Object to a List
backup_object | Make and load Backups of R Objects
basionym | Manage Accepted Names, Synonyms and Basionyms
basionym-method | Manage Accepted Names, Synonyms and Basionyms
basionym<- | Manage Accepted Names, Synonyms and Basionyms
basionym<--method | Manage Accepted Names, Synonyms and Basionyms
change_cocept | Merge Concepts
change_concept<- | Merge Concepts
change_concept<--method | Merge Concepts
clean | Clean Orphaned Records
clean-method | Clean Orphaned Records
clean_strings | Cleaning Character Strings
clean_strings-method | Cleaning Character Strings
count_taxa | Count taxa within a taxlist object
count_taxa-method | Count taxa within a taxlist object
delete_name | Handle Information on Taxon Usage Names
delete_name-method | Handle Information on Taxon Usage Names
df2taxlist | Convert Data Frames into taxlist Objects
df2taxlist-method | Convert Data Frames into taxlist Objects
dissect_name | Dissect Scientific Names into their Elements
Easplist | List of Vascular Plants from East Africa
Easplist-data | List of Vascular Plants from East Africa
Extract | Extract or Replace Parts of taxlist Objects
get_children | Retrieve Children or Parents of Taxon Concepts
get_children-method | Retrieve Children or Parents of Taxon Concepts
get_parents | Retrieve Children or Parents of Taxon Concepts
get_parents-method | Retrieve Children or Parents of Taxon Concepts
levels | Set and Retrieves Hierarchical Levels
levels-method | Set and Retrieves Hierarchical Levels
levels<- | Set and Retrieves Hierarchical Levels
levels<--method | Set and Retrieves Hierarchical Levels
load_last | Make and load Backups of R Objects
match_names | Search Matchings between Character and taxlist Objects
match_names-method | Search Matchings between Character and taxlist Objects
merge_taxa | Merge Concepts
merge_taxa-method | Merge Concepts
print_name | Format Usage Names for Publications
print_name-method | Format Usage Names for Publications
replace_view | Management of concept views in taxonomic lists.
replace_view-method | Management of concept views in taxonomic lists.
S4_to_list | Coerce an S4 Object to a List
subset | Subset Method for taxlist Objects
subset-method | Subset Method for taxlist Objects
summary | Print Overviews for taxlist Objects and their Content
summary-method | Print Overviews for taxlist Objects and their Content
synonyms | Manage Accepted Names, Synonyms and Basionyms
synonyms-method | Manage Accepted Names, Synonyms and Basionyms
tax2traits | Set Taxonomic Information as Taxon Traits
tax2traits-method | Set Taxonomic Information as Taxon Traits
taxlist | Class taxlist
taxlist-class | Class taxlist
taxon_names | Handle Information on Taxon Usage Names
taxon_names-method | Handle Information on Taxon Usage Names
taxon_names<- | Handle Information on Taxon Usage Names
taxon_names<--method | Handle Information on Taxon Usage Names
taxon_relations | Retrieve or replace slot taxonRelations in taxlist objects
taxon_relations-method | Retrieve or replace slot taxonRelations in taxlist objects
taxon_relations<- | Retrieve or replace slot taxonRelations in taxlist objects
taxon_relations<--method | Retrieve or replace slot taxonRelations in taxlist objects
taxon_traits | Manipulation of taxon traits in taxlist objects.
taxon_traits-method | Manipulation of taxon traits in taxlist objects.
taxon_traits<- | Manipulation of taxon traits in taxlist objects.
taxon_traits<--method | Manipulation of taxon traits in taxlist objects.
taxon_views | Management of concept views in taxonomic lists.
taxon_views-method | Management of concept views in taxonomic lists.
taxon_views<- | Management of concept views in taxonomic lists.
taxon_views<--method | Management of concept views in taxonomic lists.
tnrs | Phylotastic Taxonomic Name Resolution Service.
tnrs-method | Phylotastic Taxonomic Name Resolution Service.
tv2taxlist | Import species lists from Turboveg databases.
update_concept | Retrieve or replace slot taxonRelations in taxlist objects
update_concept-method | Retrieve or replace slot taxonRelations in taxlist objects
update_name | Handle Information on Taxon Usage Names
update_name-method | Handle Information on Taxon Usage Names
update_trait | Manipulation of taxon traits in taxlist objects.
update_trait-method | Manipulation of taxon traits in taxlist objects.
[ | Extract or Replace Parts of taxlist Objects
[-method | Extract or Replace Parts of taxlist Objects
[<- | Extract or Replace Parts of taxlist Objects
[<--method | Extract or Replace Parts of taxlist Objects