S                       example 'S' object
add_plateinfo           Provide information about a new MEA plate
                        format.
aggregate_features      Aggregate Feature Data
calc_burst_distributions
                        calculate and plot burst featues distributions
calc_burst_summary      Calculate average and standard deviation of the
                        bursting features.
calculate_burst_features
                        Filter spikes and bursts in recording objects
calculate_entropy_and_mi
                        Calculate Entropy and mututal information for
                        each treatment level
calculate_isis          Calculate inter spike intervals
calculate_network_bursts
                        Compute network bursts for a list of MEA
                        recordings.
calculate_network_spikes
                        Compute the netwrok spikes statistics from
                        spike lists.
calculate_spike_features
                        Filter spikes and bursts in recording objects
compute_mean_firingrate_by_well
                        mean.firingrate.by.well
compute_mean_sttc_by_well
                        Compute the mean STTC averaged across all
                        pairwise electrodes in well
compute_sttc_by_well    Compute the STTC across all pairwise electrodes
                        in well
count_ns                Count number of spikes within evenly spaced
                        time intervals(bins) from input spike trains.
dist_perm               Burst distribution permutations
filter_nonactive_spikes
                        Filter nonactive spikes from recordings
filter_wells            Filter wells
frate_counts            Estimate population firing rate using
                        fixed-width time bins.
generate_raster_plot    generate_raster_plot
get_burst_info          get burst feature information
get_data                get_data
get_experimental_log_file
                        get_experimental_log_file
get_file_basename       get_file_basename
get_num_ae              get_num_ae
get_plateinfo           Return information about an MEA plate format
get_project_plate_name
                        get_project_plate_name
get_wt                  Get WT
has_network_spikes      A utility function to check if network spikes
                        are detected.
isi                     isi
load_spikelist          Load Robject File
mi_find_bursts          Find bursts
nb_matrix_to_feature_dfs
                        Convert network burst data matrix to a list of
                        data frames.
parameters              A list of parameters with default values that
                        user can customize.
permute_features_and_plot
                        Write PDF
plateinfo               MEA plate information
plot.sttcp              Plot the STTCP
plot_active_wells_network_spikes
                        plot_active_wells_network_spikes
plot_mean_firingrate_by_eletrode_by_div
                        plot.mean.firingrate.by.eletrode.by.div
plot_mean_firingrate_by_well_by_div
                        plot.mean.firingrate.by.well.by.div
plot_network_spikes     Generic method for plotting network spikes.
plot_plate_summary_for_bursts
                        Plot burst features
plot_plate_summary_for_spikes
                        plot.plate.summary.for.spikes
publications            Show list of publications that have used this
                        package
read_spikelist          Axion convert spk_list to r_object
read_spikelist_text     Construct an MEA object by importing from text
                        files.
remove_spikes           remove_spikes
run_TMcpp               Compute STCC direct in Cpp
si_find_bursts          Find bursts
sttc                    Compute STTC for a pair of spike trains
sttc_allspikes1         Compute STTC for all pairs of spike trains
sttcp                   Compute
sttcp_ab                Compute STTC profile for two spike trains
summarize_network_spikes
                        Generate network spikes based features.
tiling_correlogramcpp   Compute all STTPs for a set of spike trains
tiling_correlogramcpp_index
                        Compute STTPs for just two spike trains, A and
                        B
write_features_to_files
                        Write feature data to an output file
write_network_spikes_to_csv
                        Summarize and write netowrk spikes features
                        into a csv file.
write_plate_summary_for_bursts
                        Prints bursting features
write_plate_summary_for_spikes
                        write_plate_summary_for_spikes
xyplot_network_spikes   xyplot for network spikes at the plate level.
