.protectSaem            SAEM dll prodection from garbage collection
Bolus_1CPT              Bolus_1CPT - 1 Compartment Model Simulated Data
                        from ACOP 2016
Bolus_1CPTMM            1 Compartment Model w/ Michelis Menton
                        Elimination
Bolus_2CPT              2 Compartment Model
Bolus_2CPTMM            2 Compartment Model with Michelis Menton
                        Clearance
Infusion_1CPT           Infusion_1CPT - 1 Compartment Model Simulated
                        Data from ACOP 2016
Oral_1CPT               Oral_1CPT - 1 Compartment Model with Oral
                        Absorption Simulated Data from ACOP 2016
VarCorr.nlmixrNlme      Return VarCorr for nlmixr nlme
Wang2007                Simulated Data Set for comparing objective
                        functions
addCwres                Add CWRES
addNpde                 NPDE calculation for nlmixr
as.focei                Convert fit to FOCEi style fit
asHux.nlmixrFitCore     Change a nlmixr fit object to a huxtable
bootdata                Bootstrap data
boxCox                  Cox Box, Yeo Johnson and inverse transformation
calc.2LL                Log-likelihood using Gaussian Quadrature
calc.COV                Covariance matrix by Fisher Information Matrix
                        via linearization
calcCov                 Calculate gnlmm variance-covariance matrix of
                        fixed effects
cholSE                  Generalized Cholesky Matrix Decomposition
configsaem              Configure an SAEM model
dynmodel                Fit a non-population dynamic model
dynmodel.mcmc           Fit a non-population dynamic model using mcmc
focei.eta               Get the FOCEi theta or eta specification for
                        model.
focei.theta             Get the FOCEi theta specification for the model
foceiControl            Control Options for FOCEi
foceiFit                FOCEi fit
frwd_selection          Forward covariate selection for nlme-base
                        non-linear mixed effect models
gauss.quad              Sets nodes and weigts of Gauss-Hermite
                        quadrature
gen_saem_user_fn        Generate an SAEM model
getOMEGA                Calculate gnlmm variance-covariance matrix of
                        random effects
gnlmm                   Fit a generalized nonlinear mixed-effect model
ini                     nlmixr ini block handling
instant.stan.extension
                        instant.stan.extension.
invgaussian             Inverse Guassian absorption model
lin_cmt                 concentrations from a linear compartment model
lincmt                  Parameters for a linear compartment model for
                        SAEM
metabolite              Parent/Metabolite dataset
model                   nlmixr model block
nlme_gof                GOF plots for nlme-based mixed-effect models
nlme_lin_cmpt           Fit nlme-based linear compartment mixed-effect
                        model using closed form solution
nlme_ode                Fit nlme-based mixed-effect model using ODE
                        implementation
nlmixr                  nlmixr fits population PK and PKPD non-linear
                        mixed effects models.
nlmixrAugPred           Augmented Prediction for nlmixr fit
nlmixrBounds.eta.names
                        Get ETA names
nlmixrBounds.focei.upper.lower
                        Get upper/lower/names for THETAs
nlmixrEval_             Create a gradient function based on gill
                        numerical differences
nlmixrGill83            Get the optimal forward difference interval by
                        Gill83 method
nlmixrHess              Calculate Hessian
nlmixrLogo              Messages the nlmixr logo...
nlmixrPred              Predict a nlmixr solved system
nlmixrSim               Simulate a nlmixr solved system
nlmixrUI.dynmodelfun    Return dynmodel variable translation function
nlmixrUI.focei.fixed    Get parameters that are fixed
nlmixrUI.focei.inits    Get the FOCEi initializations
nlmixrUI.nlme.specs     Create the nlme specs list for nlmixr nlme
                        solving
nlmixrUI.rxode.pred     Return RxODE model with predictions appended
nlmixrUI.saem.ares      Get initial estimate for ares SAEM.
nlmixrUI.saem.bres      Get initial estimate for bres SAEM.
nlmixrUI.saem.distribution
                        Get SAEM distribution
nlmixrUI.saem.eta.trans
                        Get the eta->eta.trans for SAEM
nlmixrUI.saem.fit       Generate saem.fit user function.
nlmixrUI.saem.fixed     Get parameters that are fixed for SAEM
nlmixrUI.saem.init      Get saem initilization list
nlmixrUI.saem.init.omega
                        SAEM's init$omega
nlmixrUI.saem.init.theta
                        Generate SAEM initial estimates for THETA.
nlmixrUI.saem.log.eta   Get model$log.eta for SAEM
nlmixrUI.saem.model     Generate SAEM model list
nlmixrUI.saem.model.omega
                        Get the SAEM model Omega
nlmixrUI.saem.res.mod   Get the SAEM model$res.mod code
nlmixrUI.saem.res.name
                        Get error names for SAEM
nlmixrUI.saem.theta.name
                        Get THETA names for nlmixr's SAEM
nlmixrUI.theta.pars     Get the Parameter function with THETA/ETAs
                        defined
nlmixrValidate          Validate nlmixr
nlmixrVersion           Dispaly nlmixr's version
nlmixr_fit              Fit a nlmixr model
nmDocx                  Create a run summary word document
nmLst                   Create a large output based on a nlmixr fit
nmsimplex               Nelder-Mead of simplex search
ofv                     Return the objective function
pheno_sd                Single Dose Phenobarbitol PK/PD
plot.dyn.ID             Plot of a non-population dynamic model fit
plot.dyn.mcmc           Plot of a non-population dynamic model fit
                        using mcmc
plot.nlmixrFitData      Plot a nlmixr data object
plot.saemFit            Plot an SAEM model fit
prediction              Prediction after a gnlmm fit
print.dyn.ID            Print a non-population dynamic model fit object
print.dyn.mcmc          Summary of a non-population dynamic model fit
                        using mcmc
print.gnlmm.fit         Print a gnlmm fit
print.nlmixrUI          Print UI function
print.saemFit           Print an SAEM model fit summary
pump                    Pump failure example dataset
rats                    Pregnant Rat Diet Experiment
residuals.nlmixrFitData
                        Extract residuals from the FOCEI fit
saem.cleanup            Cleanup saem_fit environment by removing dll
                        after the object is no logner used by R.
saem.fit                Fit an SAEM model
saemControl             Control Options for SAEM
setOfv                  Set Objective function type for a nlmixr object
sqrtm                   Return the square root of general square matrix
                        A
summary.dyn.ID          Summary of a non-population dynamic model fit
summary.dyn.mcmc        Summary of a non-population dynamic model fit
                        using mcmc
summary.saemFit         Print an SAEM model fit summary
tableControl            Output table/data.frame options
theo_md                 Multiple dose Theophilline PK data
theo_sd                 Multiple dose Theophilline PK data
traceplot               Produce trace-plot for fit if applicable
vpc                     Vpc function for nlmixr
vpc_nlmixr_nlme         Visual predictive check (VPC) for nlmixr nlme
                        objects
vpc_saemFit             VPC for nlmixr saemFit objects
vpc_ui                  VPC based on ui model
warfarin                Warfarin PK/PD data
