Package: pathfindR
Type: Package
Title: Pathway Enrichment Analysis Utilizing Active Subnetworks
Version: 1.3.0
Author: Ege Ulgen, Ozan Ozisik
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Description: Pathway enrichment analysis enables researchers to uncover mechanisms 
    underlying the phenotype. pathfindR is a tool for pathway enrichment analysis 
    utilizing active subnetworks. It identifies active subnetworks in a 
    protein-protein interaction network using user-provided a list of genes. 
    It performs pathway enrichment analyses on the identified subnetworks. 
    pathfindR also offers functionalities to cluster enriched pathways and identify 
    representative pathways and to score the pathways per sample. The method is
    described in detail in Ulgen E, Ozisik O, Sezerman OU. 2018. pathfindR: An R
    Package for Pathway Enrichment Analysis Utilizing Active Subnetworks. bioRxiv. 
    <doi:10.1101/272450>.
License: MIT + file LICENSE
URL: https://github.com/egeulgen/pathfindR
BugReports: https://github.com/egeulgen/pathfindR/issues
Encoding: UTF-8
LazyData: true
SystemRequirements: Java JVM 1.8
Imports: AnnotationDbi, DBI, doParallel, foreach, rmarkdown,
        org.Hs.eg.db, ggplot2, fpc, grDevices, igraph
Depends: R (>= 3.4), knitr, pathview
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-11-20 10:25:25 UTC; egeulgen
Repository: CRAN
Date/Publication: 2018-11-20 11:10:05 UTC
Built: R 3.5.3; ; 2019-11-05 19:57:12 UTC; windows
