Package: polyRAD
Version: 1.1
Date: 2019-06-04
Title: Genotype Calling with Uncertainty from Sequencing Data in
        Polyploids and Diploids
Authors@R: c(person("Lindsay V.", "Clark", email = "lvclark@illinois.edu",
                    role = c("aut", "cre"), 
                    comment = c(ORCID = "0000-0002-3881-9252")),
             person("U.S. National Science Foundation", role = "fnd"))
Author: Lindsay V. Clark [aut, cre] (<https://orcid.org/0000-0002-3881-9252>),
  U.S. National Science Foundation [fnd]
Maintainer: Lindsay V. Clark <lvclark@illinois.edu>
Imports: fastmatch, pcaMethods, methods, Rcpp
Suggests: rrBLUP, Rsamtools, GenomeInfoDb, Biostrings, GenomicRanges,
        VariantAnnotation, SummarizedExperiment, S4Vectors, IRanges,
        BiocGenerics, knitr, rmarkdown, GenomicFeatures, qqman
LinkingTo: Rcpp
VignetteBuilder: knitr, rmarkdown
Description: Read depth data from genotyping-by-sequencing (GBS) or restriction 
  site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian
  probability estimates of genotypes in polyploids or diploids.  The genotype 
  probabilities, or genotypes sampled from those probabilties, can then be exported
  for downstream analysis.  'polyRAD' is described by Clark et al. (2019)
  <doi:10.1534/g3.118.200913>.
License: GPL (>= 2)
URL: https://github.com/lvclark/polyRAD
NeedsCompilation: yes
Packaged: 2019-06-04 18:55:01 UTC; lvclark
Repository: CRAN
Date/Publication: 2019-06-04 20:00:03 UTC
Built: R 3.5.3; x86_64-w64-mingw32; 2020-04-22 04:28:34 UTC; windows
Archs: i386, x64
