Type: Package
Package: qtl2pleio
Title: Testing Pleiotropy in Multiparental Populations
Version: 1.2.3
Authors@R: 
    person(given = "Frederick J",
           family = "Boehm",
           role = c("aut", "cre"),
           email = "frederick.boehm@gmail.com",
           comment = c(ORCID = "0000-0002-1644-5931"))
Maintainer: Frederick J Boehm <frederick.boehm@gmail.com>
Description: We implement an
    adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing
    the null hypothesis of pleiotropy against the alternative hypothesis,
    two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111> 
    and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in
    that our test accommodates multiparental populations.
License: MIT + file LICENSE
URL: https://github.com/fboehm/qtl2pleio
BugReports: https://github.com/fboehm/qtl2pleio/issues
Depends: R (>= 3.1)
Imports: dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, stringr,
        tibble, parallel, Matrix
Suggests: covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools,
        qtl2
LinkingTo: Rcpp, testthat, RcppEigen
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: yes
RoxygenNote: 6.1.1
Additional_repositories: https://rqtl.org/qtl2cran
Packaged: 2019-11-01 20:17:32 UTC; fjboehm
Author: Frederick J Boehm [aut, cre] (<https://orcid.org/0000-0002-1644-5931>)
Repository: CRAN
Date/Publication: 2019-11-05 15:50:02 UTC
Built: R 3.5.3; x86_64-w64-mingw32; 2020-04-22 08:44:45 UTC; windows
Archs: i386, x64
