PD1.saemix              Data simulated according to an Emax response
                        model, in SAEM format
SaemixData-class        Class "SaemixData"
SaemixModel-class       Class "SaemixModel"
SaemixObject-class      Class "SaemixObject"
SaemixRes-class         Class "SaemixRes"
[                       Get/set methods for SaemixData object
[,SaemixModel-method    Get/set methods for SaemixModel object
[,SaemixObject-method   Get/set methods for SaemixObject object
[,SaemixRes-method      Get/set methods for SaemixRes object
[-methods               Methods for "get" Function [
[<--methods             Methods for "set" Function [<-
coef.saemix             Extract coefficients from a saemix fit
conddist.saemix         Estimate conditional mean and variance of
                        individual parameters using the MCMC algorithm
cow.saemix              Evolution of the weight of 560 cows, in SAEM
                        format
default.saemix.plots    Wrapper functions to produce certain sets of
                        default plots
fim.saemix              Computes the Fisher Information Matrix by
                        linearisation
fitted.saemix           Extract Model Predictions
initialize-methods      Methods for Function initialize
llgq.saemix             Log-likelihood using Gaussian Quadrature
llis.saemix             Log-likelihood using Importance Sampling
logLik                  Extract likelihood from a saemixObject
                        resulting from a call to saemix
map.saemix              Estimates of the individual parameters
                        (conditional mode)
oxboys.saemix           Heights of Boys in Oxford
plot,SaemixData-method
                        Plot of longitudinal data
plot,SaemixModel-method
                        Plot model predictions using an SaemixModel
                        object
plot,SaemixObject-method
                        General plot function from SAEM
plot-methods            Methods for Function plot
predict-methods         Methods for Function predict
print-methods           Methods for Function print
psi-methods             Functions to extract the individual estimates
                        of the parameters and random effects
resid.saemix            Extract Model Residuals
saemix                  Stochastic Approximation Expectation
                        Maximization (SAEM) algorithm
saemix-package          Stochastic Approximation Expectation
                        Maximization (SAEM) algorithm for non-linear
                        mixed effects models
saemix.plot.data        Functions implementing each type of plot in
                        SAEM
saemix.plot.select      Plots of the results obtained by SAEM
saemix.plot.setoptions
                        Function setting the default options for the
                        plots in SAEM
saemix.predict          Compute model predictions after an saemix fit
saemixControl           List of options for running the algorithm SAEM
saemixData              Function to create a SaemixData object
saemixModel             Function to create a SaemixModel object
show-methods            Methods for Function show
showall-methods         Methods for Function showall
simul.saemix            Perform simulations under the model
subset.SaemixData       Data subsetting
summary-methods         Methods for Function summary
testnpde                Tests for normalised prediction distribution
                        errors
theo.saemix             Pharmacokinetics of theophylline, in SAEM
                        format
transformCatCov         Transform covariates
transformContCov        Transform covariates
validate.names          Name validation (## )Helper function not
                        intended to be called by the user)
vcov                    Extracts the Variance-Covariance Matrix for a
                        Fitted Model Object
yield.saemix            Wheat yield in crops treated with fertiliser,
                        in SAEM format
