# Working with 'Sapfluxnet' Project Data

## Documentation for package ‘sapfluxnetr’ version 0.0.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

A D F G I M N P R S misc

## -- A --

ARG_MAZ | ARG_MAZ sapfluxnet site
ARG_TRE | ARG_TRE sapfluxnet site
AUS_CAN_ST2_MIX | AUS_CAN_ST2_MIX sapfluxnet site

## -- D --

daily_metrics | Complete metrics wrappers
data_coverage | data coverage
daylight_metrics | Complete metrics wrappers
describe_md_variable | Detailed description of metadata variables
diurnal_centroid | Diurnal centroid calculation

## -- F --

filter_sites_by_md | Filter the sites by metadata variable values

## -- G --

get_env_data | sfn_data custom get generics
get_env_data-method | sfn_data get methods
get_env_data-method | sfn_data_multi get methods
get_env_data<- | sfn_data replacement generics
get_env_data<--method | sfn_data replacement methods
get_env_flags | sfn_data custom get generics
get_env_flags-method | sfn_data get methods
get_env_flags-method | sfn_data_multi get methods
get_env_flags<- | sfn_data replacement generics
get_env_flags<--method | sfn_data replacement methods
get_env_md | sfn_data custom get generics
get_env_md-method | sfn_data get methods
get_env_md-method | sfn_data_multi get methods
get_env_md<- | sfn_data replacement generics
get_env_md<--method | sfn_data replacement methods
get_plant_md | sfn_data custom get generics
get_plant_md-method | sfn_data get methods
get_plant_md-method | sfn_data_multi get methods
get_plant_md<- | sfn_data replacement generics
get_plant_md<--method | sfn_data replacement methods
get_sapf_data | sfn_data custom get generics
get_sapf_data-method | sfn_data get methods
get_sapf_data-method | sfn_data_multi get methods
get_sapf_data<- | sfn_data replacement generics
get_sapf_data<--method | sfn_data replacement methods
get_sapf_flags | sfn_data custom get generics
get_sapf_flags-method | sfn_data get methods
get_sapf_flags-method | sfn_data_multi get methods
get_sapf_flags<- | sfn_data replacement generics
get_sapf_flags<--method | sfn_data replacement methods
get_site_md | sfn_data custom get generics
get_site_md-method | sfn_data get methods
get_site_md-method | sfn_data_multi get methods
get_site_md<- | sfn_data replacement generics
get_site_md<--method | sfn_data replacement methods
get_si_code | sfn_data custom get generics
get_si_code-method | sfn_data get methods
get_si_code-method | sfn_data_multi get methods
get_si_code<- | sfn_data replacement generics
get_si_code<--method | sfn_data replacement methods
get_solar_timestamp | sfn_data custom get generics
get_solar_timestamp-method | sfn_data get methods
get_solar_timestamp-method | sfn_data_multi get methods
get_solar_timestamp<- | sfn_data replacement generics
get_solar_timestamp<--method | sfn_data replacement methods
get_species_md | sfn_data custom get generics
get_species_md-method | sfn_data get methods
get_species_md-method | sfn_data_multi get methods
get_species_md<- | sfn_data replacement generics
get_species_md<--method | sfn_data replacement methods
get_stand_md | sfn_data custom get generics
get_stand_md-method | sfn_data get methods
get_stand_md-method | sfn_data_multi get methods
get_stand_md<- | sfn_data replacement generics
get_stand_md<--method | sfn_data replacement methods
get_timestamp | sfn_data custom get generics
get_timestamp-method | sfn_data get methods
get_timestamp-method | sfn_data_multi get methods
get_timestamp<- | sfn_data replacement generics
get_timestamp<--method | sfn_data replacement methods
get_timezone | get the timezone of the site

## -- I --

initialize-method | Initialize method for sfn_data
initialize-method | Initialize method for sfn_data multi

## -- M --

metrics | Complete metrics wrappers
metrics_tidyfier | Build a tidy data frame from the metrics results nested list
midday_metrics | Complete metrics wrappers
monthly_metrics | Complete metrics wrappers

## -- N --

nightly_metrics | Complete metrics wrappers
norm_diurnal_centroid | Normalized diurnal centroid calculation

## -- P --

predawn_metrics | Complete metrics wrappers

## -- R --

read_sfn_data | Read sfn_data from disk
read_sfn_metadata | Read and combine all metadata

## -- S --

sfn_data | S4 class for sapfluxnet site data
sfn_data-class | S4 class for sapfluxnet site data
sfn_data_multi | S4 class for sapfluxnet multi-site data
sfn_data_multi-class | S4 class for sapfluxnet multi-site data
sfn_data_multi_validity | Validity method for sfn_data_multi class
sfn_data_validity | Validity method for sfn_data class
sfn_filter | Filter sfn_data by variable/s value
sfn_get_generics | sfn_data custom get generics
sfn_get_methods | sfn_data get methods
sfn_metadata_ex | sfn_metadata cache file for example data (ARG_MAZ, ARG_TRE and AUS_CAN_ST2_MIX)
sfn_metrics | Metrics summary function
sfn_multi_get_methods | sfn_data_multi get methods
sfn_mutate | Mutate variables by function
sfn_mutate_at | Mutate selected columns by function
sfn_plot | plot method for sfn_data class
sfn_replacement_generics | sfn_data replacement generics
sfn_replacement_methods | sfn_data replacement methods
sfn_sites_in_folder | list available sites in a db folder
sfn_vars_to_filter | List all variables that can be used to filter sites
show-method | Show method for sfn_data
show-method | Show method for sfn_data_multi
summarise_by_period | Summaries by period

## -- misc --

%>% | Reexporting the pipe operator