Package: sequenza
Title: Copy Number Estimation from Tumor Genome Sequencing Data
Description: Tools to analyze genomic sequencing data from
 paired normal-tumor samples, including cellularity and ploidy estimation; mutation
 and copy number (allele-specific and total copy number) detection, quantification
 and visualization.
Version: 3.0.0
Date: 2019-05-09
Authors@R: c(
   person(given = "Francesco", family = "Favero",
          email = "favero.francesco@gmail.com",
          role = c("aut", "cre"),
          comment = c(ORCID = "0000-0003-3684-2659")),
   person(given = c("Andrea", "Marion"), family = "Marquard",
          role = c("rev"),
          comment = c(ORCID = "0000-0003-2928-6017")),
   person(given = "Tejal", family = "Joshi",
          role = c("rev"),
          comment = c(ORCID = "0000-0002-0939-2982")),
   person(given = c("Aron", "Charles"), family = "Eklund",
          role = c("aut", "ths"),
          comment = c(ORCID = "0000-0003-0861-1001"))
  )
Depends: R (>= 3.2.0)
Imports: pbapply, squash, iotools, readr, seqminer, copynumber
Suggests: testthat, knitr, rmarkdown, rmdformats
License: GPL-3
URL: https://sequenzatools.bitbucket.io, Mailing list:
        https://groups.google.com/forum/#!forum/sequenza-user-group
BugReports: https://bitbucket.org/sequenzatools/sequenza/issues
SystemRequirements: pandoc (>= 1.12.3)
VignetteBuilder: knitr, rmarkdown
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2019-05-09 12:58:45 UTC; lgq442
Author: Francesco Favero [aut, cre] (<https://orcid.org/0000-0003-3684-2659>),
  Andrea Marion Marquard [rev] (<https://orcid.org/0000-0003-2928-6017>),
  Tejal Joshi [rev] (<https://orcid.org/0000-0002-0939-2982>),
  Aron Charles Eklund [aut, ths]
    (<https://orcid.org/0000-0003-0861-1001>)
Maintainer: Francesco Favero <favero.francesco@gmail.com>
Repository: CRAN
Date/Publication: 2019-05-09 13:50:04 UTC
Built: R 3.5.3; ; 2020-04-22 07:36:02 UTC; windows
