# Small Molecule Octet/BLI Kinetics Experiment

## Documentation for package ‘smoke’ version 2.0.0

- DESCRIPTION file.

## Help Pages

smoke-package | Small Molecule Octet/BLI Kinetics Experiment
alignLoad | Align BLI traces with loading step
alignLoad-method | ~~ Methods for Function 'alignLoad' ~~
alignLoad-methods | ~~ Methods for Function 'alignLoad' ~~
baseline | Align BLI traces with baseline step
baseline-method | ~~ Methods for Function 'baseline' ~~
baseline-methods | ~~ Methods for Function 'baseline' ~~
Bli | Constructor of "Bli" class
bli | BLI data example
Bli-class | Class '"Bli"'
doubleBlank | Substract the double-references
doubleBlank-method | ~~ Methods for Function 'doubleBlank' ~~
doubleBlank-methods | ~~ Methods for Function 'doubleBlank' ~~
estimate | Estimate initial kinetic parameters
estimate-method | ~~ Methods for Function 'estimate' ~~
estimate-methods | ~~ Methods for Function 'estimate' ~~
fitKinetics | Fit binding kinetics
fitKinetics-method | ~~ Methods for Function 'fitKinetics' ~~
fitKinetics-methods | ~~ Methods for Function 'fitKinetics' ~~
initialize-method | ~~ Methods for Function 'initialize' ~~
initialize-methods | ~~ Methods for Function 'initialize' ~~
kinetics | Output kinetics model
kinetics-method | ~~ Methods for Function 'kinetics' ~~
kinetics-methods | ~~ Methods for Function 'kinetics' ~~
kOff0 | Getter for "Bli" slot of 'kOff0'
kOff0-method | ~~ Methods for Function 'kOff0' ~~
kOff0-methods | ~~ Methods for Function 'kOff0' ~~
kOff0<- | Setter for "Bli" slot of 'kOff0'
kOff0<--method | ~~ Methods for Function 'kOff0<-' ~~
kOff0<--methods | ~~ Methods for Function 'kOff0<-' ~~
kOn0 | Getter for "Bli" slot of 'kOn0'
kOn0-method | ~~ Methods for Function 'kOn0' ~~
kOn0-methods | ~~ Methods for Function 'kOn0' ~~
kOn0<- | Setter for "Bli" slot of 'kOn0'
kOn0<--method | ~~ Methods for Function 'kOn0<-' ~~
kOn0<--methods | ~~ Methods for Function 'kOn0<-' ~~
ligand | Getter for "Bli" slot of ligand concentration
ligand-method | ~~ Methods for Function 'ligand' ~~
ligand-methods | ~~ Methods for Function 'ligand' ~~
ligand<- | Setter for "Bli" slot of ligand concentration
ligand<--method | ~~ Methods for Function 'ligand<-' ~~
ligand<--methods | ~~ Methods for Function 'ligand<-' ~~
nls-class | Class 'nls'
plotKinetics | Plot kinetics model fitting
plotKinetics-method | ~~ Methods for Function 'plotKinetics' ~~
plotKinetics-methods | ~~ Methods for Function 'plotKinetics' ~~
plotResiduals | Plot residuals from kinetics model fitting
plotResiduals-method | ~~ Methods for Function 'plotResiduals' ~~
plotResiduals-methods | ~~ Methods for Function 'plotResiduals' ~~
plotTraces | Plot BLI traces
plotTraces-method | ~~ Methods for Function 'plotTraces' ~~
plotTraces-methods | ~~ Methods for Function 'plotTraces' ~~
show-method | ~~ Methods for Function 'show' ~~
show-methods | ~~ Methods for Function 'show' ~~
smoke | Small Molecule Octet/BLI Kinetics Experiment
status | Getter for data processing 'status'
status-method | ~~ Methods for Function 'status' ~~
status-methods | ~~ Methods for Function 'status' ~~
tExp | Getter for BLI times 'tExp'
tExp-method | ~~ Methods for Function 'tExp' ~~
tExp-methods | ~~ Methods for Function 'tExp' ~~
tExp<- | Setter for BLI times 'tExp'
tExp<--method | ~~ Methods for Function 'tExp<-' ~~
tExp<--methods | ~~ Methods for Function 'tExp<-' ~~
traces | Getter of BLI 'traces'
traces-method | ~~ Methods for Function 'traces' ~~
traces-methods | ~~ Methods for Function 'traces' ~~
traces<- | Setter of BLI 'traces'
traces<--method | ~~ Methods for Function 'traces<-' ~~
traces<--methods | ~~ Methods for Function 'traces<-' ~~