strataG-package	strataG-package
.alleleFreqFormat	jackHWE
.baseSmry	gtypes.show
.printBaseSmry	gtypes.show
.printSmryHeader	gtypes.show
accessors	gtypes.accessors
alleleFreqs	alleleFreqs
alleleSplit	alleleSplit
allelicRichness	allelicRichness
arlequin	arlequin
arlequinRead	arlequin
arlequinWrite	arlequin
arp2gtypes	arlequin
as.data.frame	as.data.frame.gtypes
as.data.frame,gtypes-method	as.data.frame.gtypes
as.data.frame.gtypes	as.data.frame.gtypes
as.matrix	as.data.frame.gtypes
as.matrix,gtypes-method	as.data.frame.gtypes
as.matrix.gtypes	as.data.frame.gtypes
as.multidna	as.multidna
baseFreqs	baseFreqs
bowhead.snp.position	bowhead.snp.position
bowhead.snps	bowhead.snps
clumpp	clumpp
createConsensus	createConsensus
dA	nucleotideDivergence
df2gtypes	df2gtypes
dloop.g	dloop.g
dolph.haps	dolph.haps
dolph.msats	dolph.msats
dolph.seqs	dolph.seqs
dolph.strata	dolph.strata
dupGenotypes	dupGenotypes
evanno	evanno
expandHaplotypes	expandHaplotypes
expectedNumAlleles	popGenEqns
fasta	fasta
fixedDifferences	fixedDifferences
fixedSites	fixedSites
freq2GenData	freq2GenData
fsc.input	fsc.input
fscBlock_dna	fsc.input
fscBlock_freq	fsc.input
fscBlock_microsat	fsc.input
fscBlock_snp	fsc.input
fscBlock_standard	fsc.input
fscCleanup	fscRun
fscDeme	fsc.input
fscEstParam	fsc.input
fscEvent	fsc.input
fscRead	fscRead
fscReadArp	fscRead
fscReadParamEst	fscRead
fscReadSFS	fscRead
fscRun	fscRun
fscSettings	fsc.input
fscSettingsDef	fsc.input
fscSettingsDemes	fsc.input
fscSettingsEst	fsc.input
fscSettingsEvents	fsc.input
fscSettingsGenetics	fsc.input
fscSettingsMigration	fsc.input
fscTutorial	fscRun
fscWrite	fscWrite
fstToNm	popGenEqns
fusFs	fusFs
gelato	gelato
gelatoPlot	gelato
genepop	genepop
genepopWrite	genepop
genind2gtypes	gtypes2genind
getAlleleNames	gtypes.accessors
getAlleleNames,gtypes-method	gtypes.accessors
getDescription	gtypes.accessors
getDescription,gtypes-method	gtypes.accessors
getIndNames	gtypes.accessors
getIndNames,gtypes-method	gtypes.accessors
getLociNames	gtypes.accessors
getLociNames,gtypes-method	gtypes.accessors
getNumInd	gtypes.accessors
getNumInd,gtypes-method	gtypes.accessors
getNumLoci	gtypes.accessors
getNumLoci,gtypes-method	gtypes.accessors
getNumStrata	gtypes.accessors
getNumStrata,gtypes-method	gtypes.accessors
getOther	gtypes.accessors
getOther,gtypes-method	gtypes.accessors
getPloidy	gtypes.accessors
getPloidy,gtypes-method	gtypes.accessors
getSchemes	gtypes.accessors
getSchemes,gtypes-method	gtypes.accessors
getSequences	gtypes.accessors
getSequences,gtypes-method	gtypes.accessors
getStrata	gtypes.accessors
getStrata,gtypes-method	gtypes.accessors
getStrataNames	gtypes.accessors
getStrataNames,gtypes-method	gtypes.accessors
gtypes	gtypes-class
gtypes-class	gtypes-class
gtypes.accessors	gtypes.accessors
gtypes.initialize	initialize-gtypes-method
gtypes.show	gtypes.show
gtypes2genind	gtypes2genind
gtypes2loci	gtypes2loci
gtypes2phyDat	gtypes2phyDat
heterozygosity	heterozygosity
Hstats	popStructStat
HWE	hweTest
hwe	hweTest
hweTest	hweTest
index	gtypes.accessors
initialize,gtypes-method	initialize-gtypes-method
initialize.gtypes	initialize-gtypes-method
is.gtypes	is.gtypes
isTi	TiTvRatio
isTv	TiTvRatio
iupac	iupac
iupacCode	iupac
iupacMat	iupac
jackHWE	jackHWE
jackInfluential	jackHWE
labelHaplotypes	labelHaplotypes
labelHaplotypes.character	labelHaplotypes
labelHaplotypes.default	labelHaplotypes
labelHaplotypes.gtypes	labelHaplotypes
labelHaplotypes.list	labelHaplotypes
landscape2df	landscape2gtypes
landscape2gtypes	landscape2gtypes
LDgenepop	LDgenepop
ldNe	ldNe
loci2gtypes	gtypes2loci
lowFreqSubs	lowFreqSubs
maf	maf
mafft	mafft
maverickRun	maverickRun
MEGA	mega
mega	mega
mega,	mega
mostDistantSequences	mostDistantSequences
mostRepresentativeSequences	mostRepresentativeSequences
mRatio	mRatio
msats.g	msats.g
neiDa	neiDa
new	initialize-gtypes-method
nucleotideDivergence	nucleotideDivergence
nucleotideDiversity	nucleotideDiversity
numAlleles	numAlleles
numGenotyped	numGenotyped
numGensEq	popGenEqns
numMissing	numMissing
overallTest	popStructTest
pairwiseTest	popStructTest
permuteStrata	permuteStrata
phase	phase
phaseFilter	phase
phasePosterior	phase
phaseReadPair	phase
phaseReadSample	phase
phaseWrite	phase
phyDat2gtypes	gtypes2phyDat
plot.jack.influential	jackHWE
popGenEqns	popGenEqns
popStructStat	popStructStat
popStructTest	popStructTest
privateAlleles	privateAlleles
propSharedLoci	sharedLoci
propUniqueAlleles	propUniqueAlleles
read.arlequin	arlequin
read.fasta	fasta
read.mega	mega
readGenData	readGenData
removeSequences	removeSequences
sequence2gtypes	sequence2gtypes
sequenceLikelihoods	sequenceLikelihoods
setDescription	gtypes.accessors
setDescription<-	gtypes.accessors
setDescription<-,gtypes-method	gtypes.accessors
setOther	gtypes.accessors
setOther<-	gtypes.accessors
setOther<-,gtypes-method	gtypes.accessors
setSchemes	gtypes.accessors
setSchemes<-	gtypes.accessors
setSchemes<-,gtypes-method	gtypes.accessors
setStrata	gtypes.accessors
setStrata<-	gtypes.accessors
setStrata<-,gtypes-method	gtypes.accessors
sfs	sfs
sharedAlleles	sharedLoci
sharedLoci	sharedLoci
show.gtypes	gtypes.show
simGammaHaps	simGammaHaps
statChi2	popStructStat
statFis	popStructStat
statFst	popStructStat
statFstPrime	popStructStat
statGst	popStructStat
statGstDblPrime	popStructStat
statGstPrime	popStructStat
statJostD	popStructStat
statPhist	popStructStat
strataG	strataG-package
strataSplit	strataSplit
stratify	stratify
structure	structure
structurePlot	structurePlot
structureRead	structure
structureRun	structure
structureWrite	structure
subset	gtypes.accessors
subType	TiTvRatio
summarizeAll	summarizeAll
summarizeInds	summarizeInds
summarizeLoci	summarizeLoci
summarizeSeqs	summarizeSeqs
summary	summary-gtypes-method
summary,gtypes-method	summary-gtypes-method
summary.gtypes	summary-gtypes-method
tajimasD	tajimasD
theta	theta
TiTvRatio	TiTvRatio
trimNs	trimNs
validIupacCodes	iupac
variableSites	variableSites
wrightFst	popGenEqns
write.arlequin	arlequin
write.fasta	fasta
write.mega	mega
write.nexus.snapp	write.nexus.snapp
writeGtypes	writeGtypes
[,gtypes,ANY,ANY,ANY-method	gtypes.accessors
