e0966c047ad708102968d1145df59c2f *DESCRIPTION
a5baa7759518ea15ba3bdf6b72cf730a *INDEX
db0b4e63bbeb45f9085b00d77a145825 *Meta/Rd.rds
598e05906c76ceab0d9ec8ecaf8877bc *Meta/features.rds
d34d42acd0ca994e02a7a33b3e6b64d6 *Meta/hsearch.rds
374fe9840ad168f9488351faa6dd52c3 *Meta/links.rds
1395dd03d4ae023ce3514b96a322c570 *Meta/nsInfo.rds
5b8db0706f71caa486b1ae43889d80cf *Meta/package.rds
359db88047d983b826fcf26b4e382cb0 *Meta/vignette.rds
73a5d8990878a49bd96bfc5616ca720c *NAMESPACE
fff3600c5ab3638a02658c019897c0ea *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/varitas
ebd60dfdbbff6ecc47397c0479a05195 *R/varitas.rdb
bdb4ca3d2c4c7d3202e87015b3ab64d0 *R/varitas.rdx
42ce14fc5cd8366b6ea29b3807cbc783 *ascii_logo.txt
627f34095eba2b97c699d8eb9914578e *config.yaml
3265141f6988a6a601f45b255be89ece *ctdna_defaults.yaml
7adecb0952215c6309da7db20df110e9 *doc/errors.R
7fa468617190ce56858e3eae823b263e *doc/errors.Rmd
5002687e40fe635fa901a40d4f3b5bb3 *doc/errors.html
564b1d394b0a133dd1f55046379838ac *doc/index.html
9dcdeb93e908650d652a78f9ac83589b *doc/introduction.R
c6d010db458c0560d49b334643f003d6 *doc/introduction.Rmd
4fdc3c94add371327aa19bc695180bb4 *doc/introduction.html
d41d8cd98f00b204e9800998ecf8427e *extdata/bam/Sample_1.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/bam/Sample_2.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample001_R1.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample001_R2.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample002_R1.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample002_R2.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample003_R1.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample003_R2.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample004_R1.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample004_R2.fastq
74c76fbb043a3b7b4c975e6625f829e6 *extdata/miniseq/Example_template.csv
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/fastq/001_S1_L001_R1_example.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/fastq/001_S1_L001_R2_example.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/fastq/002_S1_L001_R1_example.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/fastq/002_S1_L001_R2_example.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/isis/001_S1_example.vcf
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/isis/002_S1_example.vcf
d41d8cd98f00b204e9800998ecf8427e *extdata/vcf/Sample_1.vcf
d41d8cd98f00b204e9800998ecf8427e *extdata/vcf/Sample_2.vcf
9eb51e1ee469c990f0e93ed324e618e7 *help/AnIndex
d77d203c743a42c58c04fec1bd8a2955 *help/aliases.rds
517299f83031e306b2d2fcd231494c4c *help/paths.rds
e421222877da7c33ce0f97f1ab53418e *help/varitas.rdb
77005a2fe3b4e50870932f96cfc5d490 *help/varitas.rdx
ef6e71fc65e9d96c9a330add0b439111 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1f230d2db257d53f9a4ae42b10394c77 *perl/filter.pl
5ec8d3299984d2ff49af2dbf420cbf45 *perl/run_alignment.pl
be634c8aaddbea93b1ebcf45f59a3dd0 *perl/run_annovar.pl
3305b9fb121493817507753d58bab840 *perl/run_annovar_isis.pl
bd589f17b144745ca2b5fe123d10354c *perl/run_iDES_sample.pl
32a27b04545a1eea7883d57bd5f28ead *perl/run_lofreq.pl
54f929b2ab36231e66bbc4767d0228e7 *perl/run_muse.pl
e6022f625c0a6a28f3b369ded50cc461 *perl/run_mutect.pl
31aee999bff02c7ca2545daa0f362cf8 *perl/run_post_processing.pl
4e2618702f22d304a730d8cb48642a16 *perl/run_vardict.pl
a713642e328b70f5deb155a7c4f11b13 *perl/run_varscan.pl
bfc262b34dd4c850bba23eef1bd36111 *perl/target_qc.pl
11278594bf30a7edc0d7c980e1dcce6f *perl/var2vcf_valid.pl
c3cb4c12eb4c7ab2f8ba05a9a530a8f7 *report_template.Rmd
303f6190e3eb12f2d1bac7bf6bbe97b8 *tumour_defaults.yaml
