CSP.heights.plot        likeLTD::CSP.heights.plot
DEoptimLoop             likeLTD::DEoptimLoop
DNA17-db                NGMSelect allele database
Identifiler-db          Identifiler allele database
NISTglobalfiler-db      Globalfiler allele database from NIST
NISTidentifiler-db      Identifiler allele database from NIST
SGMplus-db              SGMplus allele database
allele.report           likeLTD::allele.report
allele.report.peaks     likeLTD::allele.report.peaks
compatible.genotypes    likeLTD::compatible.genotypes
create.likelihood       likeLTD::create.likelihood
create.likelihood.log   likeLTD::create.likelihood.log
create.likelihood.vectors
                        likeLTD::create.likelihood.vectors
create.likelihood.vectors.peaks
                        likeLTD::create.likelihood.vectors.peaks
defence.hypothesis      likeLTD::defence.hypothesis
defence.hypothesis.peaks
                        likeLTD::defence.hypothesis.peaks
determine.dropout       determine.dropout
evaluate                likeLTD::evaluate
evaluate.from.interim   likeLTD::evaluate.from.interim
evaluate.from.interim.peaks
                        likeLTD::evaluate.from.interim.peaks
evaluate.peaks          likeLTD::evaluate.peaks
get.likely.genotypes    likeLTD::get.likely.genotypes
get.likely.genotypes.peaks
                        likeLTD::get.likely.genotypes.peaks
initial.arguments       likeLTD::initial.arguments
lgc-allele-freqs-wbp    Allele database
likeLTD                 likeLTD
linkage                 Recombination rates for linked loci
load.allele.database    likeLTD::load.allele.database
locus.likes             likeLTD::locus.likes
locus.likes.peaks       likeLTD::locus.likes.peaks
objective.function      likeLTD objective functions
optimisation.params     likeLTD::optimisation.params
optimisation.params.peaks
                        likeLTD::optimisation.params.peaks
output.report           likeLTD::output.report
output.report.peaks     likeLTD::output.report.peaks
pack.admin.input        likeLTD::pack.admin.input
pack.admin.input.peaks
                        likeLTD::pack.admin.input.peaks
peaks.results.plot      likeLTD::peaks.results.plot
penalties               likeLTD::penalties
plotLikelihood.2d       likeLTD::plotLikelihood.2d
prosecution.hypothesis
                        likeLTD::prosecution.hypothesis
prosecution.hypothesis.peaks
                        likeLTD::prosecution.hypothesis.peaks
read.csp.profile        likeLTD::read.csp.profile
read.known.profiles     likeLTD::read.known.profiles
read.peaks.profile      likeLTD::read.peaks.profile
read.unc.profile        likeLTD::read.unc.profile
relistArguments         likeLTD::relistArguments
relistArguments.peaks   likeLTD::relistArguments.peaks
unitTests.likeLTD       Unit tests for the package likeLTD
