Package: o2geosocial
Type: Package
Title: Reconstruction of Transmission Chains from Surveillance Data
Version: 1.0.1
URL: https://github.com/alxsrobert/o2geosocial
Encoding: UTF-8
Authors@R: c(person("Alexis", "Robert", email = "alexis.robert@lshtm.ac.uk", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-4516-2965")),
		    person("Sebastian", "Funk", email = "sebastian.funk@lshtm.ac.uk", role = c("aut"), comment = c(ORCID = "0000-0002-2842-3406")),
		    person("Adam J", "Kucharski", email = "adam.kucharski@lshtm.ac.uk", role = c("aut"), comment = c(ORCID = "0000-0001-8814-9421")),
		    person("Thibaut", "Jombart", role = c("ctb")))
Maintainer: Alexis Robert <alexis.robert@lshtm.ac.uk>
Description: Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P, Funk S. 2020 <doi:10.1098/rsif.2020.0084>).
License: MIT + file LICENSE
Imports: Rcpp, methods, stats, grDevices, geosphere, ggplot2,
        visNetwork, data.table, outbreaker2
LazyData: true
Depends: R(>= 3.5.0)
LinkingTo: Rcpp
RoxygenNote: 7.1.1
Suggests: testthat, tigris, sf, knitr, socialmixr, rmarkdown
VignetteBuilder: knitr
BugReports: https://github.com/alxsrobert/o2geosocial/issues
NeedsCompilation: yes
Packaged: 2020-09-23 21:20:59 UTC; Alexis Robert
Author: Alexis Robert [aut, cre, cph] (<https://orcid.org/0000-0002-4516-2965>),
  Sebastian Funk [aut] (<https://orcid.org/0000-0002-2842-3406>),
  Adam J Kucharski [aut] (<https://orcid.org/0000-0001-8814-9421>),
  Thibaut Jombart [ctb]
Repository: CRAN
Date/Publication: 2020-09-25 13:40:02 UTC
Built: R 3.6.3; x86_64-w64-mingw32; 2021-05-12 23:33:29 UTC; windows
Archs: i386, x64
