Package: propr
Title: Calculating Proportionality Between Vectors of Compositional
        Data
Version: 4.2.6
URL: http://github.com/tpq/propr
BugReports: http://github.com/tpq/propr/issues
Authors@R: c(
    person("Thomas", "Quinn", email = "contacttomquinn@gmail.com", role = c("aut", "cre")),
    person("David", "Lovell", email = "david.lovell@qut.edu.au", role = "aut"),
    person("Ionas", "Erb", email = "ionas.erb@crg.eu", role = "aut"),
    person("Anders", "Bilgrau", email = "anders.ellern.bilgrau@gmail.com", role = "ctb"),
    person("Greg", "Gloor", email = "ggloor@uwo.ca", role = "ctb"),
    person("Ryan", "Moore", email = "rmm1047@gmail.com", role = "ctb")
    )
Description: The bioinformatic evaluation of gene co-expression often begins with
    correlation-based analyses. However, correlation lacks validity when
    applied to relative data, including count data generated by next-generation
    sequencing. This package implements several metrics for proportionality, including
    phi [Lovell et al (2015) <DOI:10.1371/journal.pcbi.1004075>] and
    rho [Erb and Notredame (2016) <DOI:10.1007/s12064-015-0220-8>]. This package also
    implements several metrics for differential proportionality. Unlike correlation,
    these measures give the same result for both relative and absolute data.
License: GPL-2
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Encoding: UTF-8
Depends: methods, R (>= 3.2.2)
Imports: fastcluster, ggplot2, grDevices, igraph, Rcpp, stats, utils
Suggests: ALDEx2, Biobase, cccrm, compositions, data.table, datasets,
        grid, ggdendro, knitr, limma, parallel, plotly, reshape2, rgl,
        rmarkdown, SDMTools, testthat, vegan
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2019-12-16 03:02:22 UTC; thom
Author: Thomas Quinn [aut, cre],
  David Lovell [aut],
  Ionas Erb [aut],
  Anders Bilgrau [ctb],
  Greg Gloor [ctb],
  Ryan Moore [ctb]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>
Repository: CRAN
Date/Publication: 2019-12-16 06:10:10 UTC
Built: R 3.6.3; x86_64-w64-mingw32; 2021-05-12 21:47:36 UTC; windows
Archs: i386, x64
