DESeq2Fit               Analysis of LPS RFI RNA-seq data Using DESeq2
NewTimeEst              Estimate New Time Points
TC_CAR1                 RNA-seq Analysis for Repeated-measures Data
TC_CAR1_sc              A Wrap Function to analyze a Simulated Data -
                        All Cases
TimeMin                 Identify Time Points Mapping to 0 and 1
covset                  Covariate Set Associated with RFI RNA-seq
dat                     RFI RNA-seq Data
design                  Reparameterized Design Matrix
edgeRFit                Analysis of the RFI RNA-seq data Using edgeR
estimate.m0             Estimate Number of True Null Hypotheses Using
                        Histogram-based Method
glsCAR1                 Fit General Linear Model with 'corCAR1'
                        Correlation Structure for One Gene
glsCAR1_loglik          Calculate REML Log-Likelihood of glsCAR1 model
                        for each gene
glsSymm                 Fit General Linear Model with 'corSymm'
                        Correlation Structure for One Gene
jabes.q                 Q-value Using Histogram-based Method
my_splineDiffExprs      Differential expression analysis based on
                        natural cubic spline regression models for
                        time-course data
myvoom                  myvoom function
pauc_out                Evaluation of Differential Expression Analysis
                        Methods
res                     Data Containing Results of Our Proposed Method
                        Applying to RFI RNA-seq data
resSymm                 Data Containing results when analyzing RFI
                        using TC_Symm
sc_CAR1                 Simulating Count Data From The Output of Real
                        Data Analysis
sc_Symm                 Simulating Count Data From The Output of Real
                        Data Analysis (corSymm)
shrink.phi              Shrinkaged Estimates of Error Variance
teststat                Calculating F-Type Statistics To Test a General
                        Linear Hypothesis
varbeta                 Recovering a Symmetric Matrix from Its Lower
                        Triangular Matrix
voomgls_CAR1            General Linear Model Using Voom Output
voomgls_Symm            General Linear Model Using Voom Output corSymm
                        correlction structure
voomlimmaFit            Analysis of RFI RNA-seq data Using voom
