Soil Database Interface

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Documentation for package ‘soilDB’ version 2.6.1

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C D E F G I K L M N O P R S T U W misc

soilDB-package Soil Database Interface

-- C --

code Convert coded values returned from NASIS and SDA queries to factors
createStaticNASIS Create a memory or file-based instance of NASIS database

-- D --

dbConnectNASIS Create a connection to a local NASIS database
dbQueryNASIS Send queries to a NASIS DBIConnection

-- E --

estimateColorMixture Estimate color mixtures using weighted average of CIELAB color coordinates
estimateSTR Estimate Soil Temperature Regime

-- F --

fetchGDB Load and Flatten Data from SSURGO file geodatabases
fetchHenry Download Data from the Henry Mount Soil Temperature and Water Database
fetchKSSL Fetch KSSL Data
fetchNASIS Fetch commonly used site/pedon/horizon or component data from NASIS.
fetchNASISLabData Fetch lab data used site/horizon data from a PedonPC database.
fetchNASISWebReport Extract component tables from NASIS Web Reports
fetchOSD Fetch Official Series Descriptions and summaries from SoilWeb API
fetchPedonPC Fetch commonly used site/horizon data from a PedonPC v.5 database.
fetchRaCA Get Rapid Carbon Assessment (RaCA) data
fetchSCAN Fetch SCAN Data
fetchSDA Download and Flatten Data from Soil Data Access
fetchSDA_spatial Query Soil Data Access and Return Spatial Data
fetchSoilGrids Fetch SoilGrids 250m properties information from point locations
fetchVegdata Load most common vegplot data from local NASIS database
filter_geochem Filter KSSL Geochemical Table
format_SQL_in_statement Format vector of values into a string suitable for an SQL 'IN' statement.

-- G --

getHzErrorsNASIS Check pedon horizon table for logic errors
getHzErrorsPedonPC Fetch commonly used site/horizon data from a PedonPC v.5 database.
get_chorizon_from_NASISWebReport Extract component tables from NASIS Web Reports
get_chorizon_from_SDA Download and Flatten Data from Soil Data Access
get_cointerp_from_SDA Download and Flatten Data from Soil Data Access
get_colors_from_NASIS_db Extract Soil Color Data from a local NASIS Database
get_colors_from_pedon_db Extract Soil Color Data from a PedonPC Database
get_comonth_from_NASIS_db Extract component month data from a local NASIS Database
get_component_cogeomorph_data_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_component_copm_data_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_component_correlation_data_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_component_data_from_NASIS_db Extract component data from a local NASIS Database
get_component_diaghz_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_component_esd_data_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_component_from_GDB Load and Flatten Data from SSURGO file geodatabases
get_component_from_NASISWebReport Extract component tables from NASIS Web Reports
get_component_from_SDA Download and Flatten Data from Soil Data Access
get_component_horizon_data_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_component_otherveg_data_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_component_restrictions_from_NASIS_db Extract component data from a local NASIS Database
get_concentrations_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_copedon_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_cosoilmoist_from_NASIS Read and Flatten the Component Soil Moisture Tables
get_cosoilmoist_from_NASISWebReport Extract component tables from NASIS Web Reports
get_cosoilmoist_from_SDA Download and Flatten Data from Soil Data Access
get_cotext_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_EDIT_ecoclass_by_geoUnit Get data.frame of all ecoclass for multiple EDIT geoUnit in ESD or ESG catalog
get_extended_data_from_NASIS_db Extract accessory tables and summaries from a local NASIS Database
get_extended_data_from_pedon_db Extract accessory tables and summaries from a local pedonPC Database
get_hz_data_from_NASIS_db Extract Horizon Data from a local NASIS Database
get_hz_data_from_pedon_db Extract Horizon Data from a PedonPC Database
get_lablayer_data_from_NASIS_db Extract lab pedon layer data from a local NASIS Database
get_labpedon_data_from_NASIS_db Extract lab pedon data from a local NASIS Database
get_legend_from_GDB Load and Flatten Data from SSURGO file geodatabases
get_legend_from_NASIS Load most common vegplot data from local NASIS database
get_legend_from_NASISget_lmuaoverlap_from_NASIS Fetch commonly used site/pedon/horizon or component data from NASIS.
get_legend_from_NASISWebReport Extract component tables from NASIS Web Reports
get_legend_from_SDA Download and Flatten Data from Soil Data Access
get_lmuaoverlap_from_NASIS Load most common vegplot data from local NASIS database
get_lmuaoverlap_from_NASISWebReport Extract component tables from NASIS Web Reports
get_lmuaoverlap_from_SDA Download and Flatten Data from Soil Data Access
get_mapunit_from_GDB Load and Flatten Data from SSURGO file geodatabases
get_mapunit_from_NASIS Fetch commonly used site/pedon/horizon or component data from NASIS.
get_mapunit_from_NASISWebReport Extract component tables from NASIS Web Reports
get_mapunit_from_SDA Download and Flatten Data from Soil Data Access
get_mutext_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_NOAA_GHCND Get Global Historical Climatology Network Daily (GHCND) data from NOAA API for given datatype(s), station IDs and years.
get_NOAA_stations_nearXY Query the NOAA API to get station data near a given latitude and longitude
get_OSD_JSON Fetch Official Series Description Raw Data in JSON format
get_phfmp_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_phorizon_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_progress_from_NASISWebReport Extract component tables from NASIS Web Reports
get_projectmapunit2_from_NASISWebReport Extract component tables from NASIS Web Reports
get_projectmapunit_from_NASIS Fetch commonly used site/pedon/horizon or component data from NASIS.
get_projectmapunit_from_NASISWebReport Extract component tables from NASIS Web Reports
get_project_correlation_from_NASISWebReport Extract component tables from NASIS Web Reports
get_project_from_NASISWebReport Extract component tables from NASIS Web Reports
get_RMF_from_NASIS_db Fetch commonly used site/pedon/horizon or component data from NASIS.
get_SDA_hydric Get map unit hydric soils information from Soil Data Access
get_SDA_interpretation Get map unit interpretations from Soil Data Access by rule name
get_SDA_muaggatt Get map unit aggregate attribute information from Soil Data Access
get_SDA_pmgroupname Get map unit parent material group information from Soil Data Access
get_SDA_property Get map unit properties from Soil Data Access
get_sitesoilmoist_from_NASISWebReport Extract component tables from NASIS Web Reports
get_site_data_from_NASIS_db Extract Site Data from a local NASIS Database
get_site_data_from_pedon_db Extract Site Data from a PedonPC Database
get_soilseries_from_NASIS Get records from the Soil Classification (SC) database
get_soilseries_from_NASISWebReport Get records from the Soil Classification (SC) database
get_text_notes_from_NASIS_db Extract text note data from a local NASIS Database
get_vegplot_from_NASIS_db Load most common vegplot data from local NASIS database
get_vegplot_location_from_NASIS_db Load most common vegplot data from local NASIS database
get_vegplot_species_from_NASIS_db Load most common vegplot data from local NASIS database
get_vegplot_textnote_from_NASIS_db Load most common vegplot data from local NASIS database
get_vegplot_transect_from_NASIS_db Load most common vegplot data from local NASIS database
get_vegplot_transpecies_from_NASIS_db Load most common vegplot data from local NASIS database
get_vegplot_tree_si_details_from_NASIS_db Load most common vegplot data from local NASIS database
get_vegplot_tree_si_summary_from_NASIS_db Load most common vegplot data from local NASIS database
get_vegplot_trhi_from_NASIS_db Load most common vegplot data from local NASIS database
get_veg_data_from_NASIS_db Extract veg data from a local NASIS Database
get_veg_from_AK_Site Retrieve Vegetation Data from an AK Site Database
get_veg_from_MT_veg_db Extract Site and Plot-level Data from a Montana RangeDB database
get_veg_from_NPS_PLOTS_db Retrieve Vegetation Data from an NPS PLOTS Database
get_veg_other_from_MT_veg_db Extract cover composition data from a Montana RangeDB database
get_veg_species_from_MT_veg_db Extract species-level Data from a Montana RangeDB database
gopheridge Example 'SoilProfilecollection' Objects Returned by 'fetchNASIS'.

-- I --

ISSR800.wcs ISSR-800 Web Coverage Service (WCS)

-- K --

KSSL_VG_model Develop a Water Retention Curve from KSSL Data

-- L --

loafercreek Example 'SoilProfilecollection' Objects Returned by 'fetchNASIS'.
local_NASIS_defined Check for presence of 'nasis_local' ODBC data source

-- M --

makeChunks Generate chunk labels for splitting data
make_EDIT_service_URL make_EDIT_service_URL
mapunit_geom_by_ll_bbox Fetch Map Unit Geometry from SDA
metadata Convert coded values returned from NASIS and SDA queries to factors
mineralKing Example 'SoilProfilecollection' Objects Returned by 'fetchNASIS'.
mix_and_clean_colors Mix and Clean Colors
month2season Download Data from the Henry Mount Soil Temperature and Water Database
mukey.wcs gNATSGO / gSSURGO Map Unit Key Web Coverage Service (WCS)

-- N --

NASIS Create a connection to a local NASIS database
NASIS_table_column_keys NASIS 7 Tables, Columns and Foreign Keys

-- O --

OSDquery Full text searching of the USDA-NRCS Official Series Descriptions

-- P --

parseWebReport Parse contents of a web report, based on supplied arguments.
processSDA_WKT Post-process WKT returned from SDA.

-- R --

ROSETTA ROSETTA Model API

-- S --

SCAN_sensor_metadata Fetch SCAN Data
SCAN_site_metadata Fetch SCAN Data
SCAN_SNOTEL_metadata SCAN and SNOTEL Station Metadata
SDA_make_spatial_query SDA Spatial Query
SDA_query Soil Data Access Query
SDA_query_features SDA Spatial Query
SDA_spatialQuery SDA Spatial Query
seriesExtent Retrieve Soil Series Extent Maps from SoilWeb
siblings Lookup siblings and cousins for a given soil series.
simplfyFragmentData Simplify Coarse Fraction Data
simplifyArtifactData Simplify Coarse Fraction Data
simplifyColorData Simplify Color Data by ID
simplifyFragmentData Simplify Coarse Fraction Data
soilDB Soil Database Interface
soilDB.env Soil Database Interface
SoilWeb_spatial_query Get SSURGO Data via Spatial Query
state_FIPS_codes SCAN and SNOTEL Station Metadata
STRplot Graphical Description of US Soil Taxonomy Soil Temperature Regimes
summarizeSoilTemperature Download Data from the Henry Mount Soil Temperature and Water Database

-- T --

taxaExtent Retrieve Soil Taxonomy Membership Grids

-- U --

uncode Convert coded values returned from NASIS and SDA queries to factors
us_ss_timeline Timeline of US Published Soil Surveys

-- W --

waterDayYear Compute Water Day and Year
WCS_details Web Coverage Services Details

-- misc --

.dump_NASIS_table Method for "dumping" contents of an entire NASIS table
.get_NASIS_fkey_by_name Get a NASIS table key by type and table name
.get_NASIS_pkeyref_by_name Get a NASIS table key by type and table name
.get_NASIS_pkey_by_name Get a NASIS table key by type and table name
.get_NASIS_table_key_by_name Get a NASIS table key by type and table name
.get_NASIS_table_name_by_purpose Return NASIS 7 Physical Table Names