# Genotype by Environment (GxE) Analysis

## Documentation for package ‘statgenGxE’ version 1.0.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

correlations | Compute different types of correlations.
CRDR | Calculate the correlated response to selection
diagnostics | Get diagnostics for an object of class varComp
dropsPheno | DROPS data set
fitted.AMMI | Extract fitted values.
fitted.FW | Extract fitted values.
fitted.varCov | Extract fitted values.
gxeAmmi | AMMI analysis
gxeFw | Finlay-Wilkinson analysis
gxeGGE | GGE analysis
gxeMegaEnv | Form mega environments based on fitted values from an AMMI model
gxeStability | Calculate stability coefficients for genotype-by-environment data
gxeVarComp | Mixed model analysis of GxE table of means
gxeVarCov | Selects the best variance-covariance model for a set of trials
herit | Calculate heritability
multMissing | Estimate missing values in multivariate data
plot.AMMI | Plot function for class AMMI
plot.FW | Plot function for class FW
plot.megaEnv | Plot function for class megaEnv
plot.stability | Plot function for class stability
plot.varComp | Plot function for class varComp
plot.varCov | Plot function for class varCov
predict.megaEnv | Compute BLUPS based on a set of mega environments
predict.varComp | Predictions based on a fitted varComp model.
report.AMMI | Report method for class AMMI
report.FW | Report method for class FW
report.stability | Report method for class stability
report.varCov | Report method for class varCov
residuals.AMMI | Extract residuals.
residuals.FW | Extract residuals.
residuals.varCov | Extract residuals.
TDMaize | Field data for a maize experiment in Tlaltizapan, Mexico
vc | Extract variance components