DAVID                   Human longitudinal microbiome data
GEVERS                  Inflammatory bowel disease gut microbiome data
cnn                     Normalize an OTU table by 16S rRNA copy number
download_ref            Download functional prediction reference tables
est                     Estimate topic or function effects
est.functions           Estimate predicted function-topic effects
est.topics              Estimate topic effects
extract                 Extract summary statistics
find_topics             Perform topic estimation on a themetadata
                        object
picrust                 Predict OTU functional content via PICRUSt
picrust_otu             Predict OTU functional potential via PICRUSt
predict.topics          Predict topic functional content
prepare_data            Prepare themetadata object from data for topic
                        modeling pipeline
resume                  Resume HMC using a previous fit
s                       Make a B-spline Basis Function (from 's')
t4f                     Predict taxonomic functional content via
                        tax4fun
vis                     Launch in interactive visualize to explore
                        topic effects
