alpha_div               Alpha Diversity Calculations for tidy_micro
bb_bars                 Create stacked bar charts based on beta
                        binomial model estimates
bb_mods                 Fit beta binomial models to each taxa within an
                        OTU table
beta_div                Beta Diversity Calculations for tidy_micro
beta_heatmap            Create heatmaps of the supplied dissimilarity
                        matrices
bpd_cla                 An OTU table of class level taxa counts from a
                        BPD1 study
bpd_clin                A data set containing the clinical data of the
                        subjects sequenced for BPD1 study
bpd_fam                 An OTU table of family level taxa counts from
                        BPD1 study
bpd_ord                 An OTU table of order level taxa counts study
bpd_phy                 An OTU table of phylum level taxa counts study
cor_heatmap             Create correlation heatmaps of taxa and another
                        continuous variable
cor_rocky_mtn           Create Rocky Mountain plots from taxa relative
                        abundance correlations
micro_PERMANOVA         A function to run PERMANOVA on tidi_micro data
                        sets
micro_alpha_reg         Linear regression on alpha diversities within a
                        micro_set
micro_chisq             Run Chi-Squared tests for each taxa
micro_forest            Create forest plots from negative binomial taxa
                        models
micro_heatmap           Create heatmaps of estiamted coefficients from
                        negative binomial models
micro_otu               Extract OTU table from tidyMicro set
micro_pca               Calculate and plot principle components
micro_rank_sum          Run rank sum tests for each taxa within an OTU
                        table
micro_rocky_mtn         Create Rocky Mountain plots from negative
                        binomial taxa models
mrsa_clin               A data set containing the clinical data of the
                        subjects sequenced for MRSA study
mrsa_gen                An OTU table of genus level taxa counts from a
                        MRSA study
nb_bars                 Create stacked bar charts based on negative
                        binomial model estimates
nb_mods                 Fit negative binomial models to each taxa
                        within an OTU table
otu_filter              A function to aggregate low prevalence,
                        abundance, or unwanted taxa together
pca_3d                  Create 3d PCA plots
ra_bars                 Function to make stacked bar charts of taxa
                        relative abundance
taxa_boxplot            Function to make boxplots of taxa counts or
                        relative abundance
taxa_summary            Summarize the information
three_mode              Create Three Mode PCA and PCoA plots
tidy_micro              A function to merge multiple OTU tables and
                        clinical data into a "tidy" format
