Brings Seurat to the Tidyverse


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Documentation for package ‘tidyseurat’ version 0.1.8

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arrange drplyr-methods
arrange.default drplyr-methods
as_tibble Coerce lists, matrices, and more to data frames
bind Efficiently bind multiple data frames by row and column
bind_cols drplyr-methods
bind_rows drplyr-methods
cell_type_df Example data set 2
count Count observations by group
distinct distinct
extract Extract a character column into multiple columns using regular expression groups
filter Subset rows using column values
full_join Full join datasets
ggplot Create a new ggplot from a tidyseurat object
group_by Group by one or more variables
inner_join Inner join datasets
join_transcripts Extract and join information for transcripts.
left_join Left join datasets
mutate Create, modify, and delete columns
nest unnest
nest.default unnest
nest.tidyseurat unnest
pbmc_small Example data set
pbmc_small_nested_interactions Example data set 2
pivot_longer Pivot data from wide to long
plot_ly Initiate a plotly visualization
pull Extract a single column
rename Rename columns
right_join Right join datasets
rowwise Group input by rows
select Subset columns using their names and types
separate Separate a character column into multiple columns with a regular expression or numeric locations
slice Subset rows using their positions
summarise Summarise each group to fewer rows
tidy tidy for seurat
unite Unite multiple columns into one by pasting strings together
unnest unnest
unnest.default unnest
unnest.tidyseurat_nested unnest