are_tmhs                Are the sequences TMHs?
check_tmhmm_installation
                        Checks the installation of TMHMM. Throws a
                        helpful error message if incomplete, else does
                        nothing
check_topology          Check if the topology is valid.
default_params_doc      This function does nothing. It is intended to
                        inherit is parameters' documentation.
get_default_tmhmm_bin_path
                        Get the default path to the TMHMM binary
get_default_tmhmm_folder
                        Get the path to the folder where this package
                        installs TMHMM by default
get_tmhmm_url           Get an URL to download TMHMM from. These URLs
                        expire.
install_tmhmm           Install NetMHC2pan to a local folder
install_tmhmm_bin       Install the NetMHC2pan binary to a local folder
is_locatome_line        Is the line of text the locatome, as used
                        within a FASTA filename?
is_on_travis            Determines if the environment is Travis CI
is_protein_name_line    Is the line of text the name of a protein, as
                        used within a FASTA filename?
is_tmh                  Determine if the protein sequence contains at
                        least one TMH.
is_tmhmm_bin_installed
                        Measure if TMHMM binary is installed locally
is_tmhmm_installed      Measure if TMHMM is installed locally
is_tmhmm_result         Is the text a TMHMM result text?
is_tmhmm_set_up         Determine if TMHMM is set up
is_url_valid            Is the download URL valid?
locatome_to_df          Convert a multi-line locatome to a tidy data
                        frame
plot_locatome           Plot the locatome
run_tmhmm               Run TMHMM
run_tmhmm_on_sequence   Run TMHMM directy on a protein sequence
run_tmhmm_to_file       Creates a FASTA-like file, that has the
                        locations of the amino acids.
set_up_tmhmm            Set up TMHMM
tally_locatome          Tally each location in a locatome
tally_tmhs              Count the number of transmembrane helices in a
                        topology
tmhmm                   tmhmm: estimate the topoplogy of membrane
                        proteins
tmhmm_self_test         Self-test the TMHMM installation
uninstall_tmhmm         Uninstall TMHMM
