GrowthRates             Calculates growth rates (AGR, PGR, RGRdiff)
                        between pairs of values in a vector
PVA                     Selects a subset of variables using Principal
                        Variable Analysis (PVA)
PVA.data.frame          Selects a subset of variables stored in a
                        data.frame using Principal Variable Analysis
                        (PVA)
PVA.matrix              Selects a subset of variables using Principal
                        Variable Analysis (PVA) based on a correlation
                        matrix
RiceRaw.dat             Data for an experiment to investigate a rice
                        germplasm panel
WUI                     Calculates the Water Use Index (WUI)
anom                    Tests if any values in a vector are anomalous
                        in being outside specified limits
calcLagged              Replaces the values in a vector with the result
                        of applying an operation to it and a lagged
                        value
calcTimes               Calculates for a set of times, the time
                        intervals after an origin time and the position
                        of each within a time interval
cumulate                Calculates the cumulative sum, ignoring the
                        first element if exclude.1st is TRUE
designFactors           Adds the factors and covariates for a blocked,
                        split-plot design
exampleData             A small data set to use in function examples
fitSpline               Produce the fits from a natural cubic smoothing
                        spline applied to a response in a 'data.frame',
                        and growth rates can be computed using
                        derivatives
getTimesSubset          Forms a subset of 'responses' in 'data' that
                        contains their values for the nominated times
growthPheno-deprecated
                        Deprecated Functions in the Package asremlPlus
growthPheno-pkg         Plotting, Smoothing and Growth Trait Extraction
                        for Longitudinal Data
importExcel             Imports an Excel imaging file and allows some
                        renaming of variables
intervalGRaverage       Calculates the growth rates for a specified
                        time interval by taking weighted averages of
                        growth rates for times within the interval
intervalGRdiff          Calculates the growth rates for a specified
                        time interval
intervalPVA.data.frame
                        Selects a subset of variables using Principal
                        Variable Analysis (PVA), based on the observed
                        values within a specified time interval
intervalValueCalculate
                        Calculates a single value that is a function of
                        an individual's values for a response over a
                        specified time interval
intervalWUI             Calculates water use indices (WUI) over a
                        specified time interval to a data.frame
longitudinalPrime       Selects a set variables to be retained in a
                        data frame of longitudinal data
plotAnom                Identifies anomalous individuals and produces
                        longitudinal plots without them and with just
                        them
plotCorrmatrix          Calculates and plots correlation matrices for a
                        set of responses
plotDeviationsBoxes     Produces boxplots of the deviations of the
                        observed values from the smoothed values over
                        values of x.
plotImagetimes          Plots the position of a time within an interval
                        against the interval for each cart
plotLongitudinal        Plots longitudinal data for a set of
                        indiividuals
plotMedianDeviations    Calculates and plots the median of the
                        deviations of the smoothed values from the
                        observed values.
probeDF                 Compares, for a set of specified values of df,
                        a response and the smooths of it, possibly
                        along with growth rates calculated from the
                        smooths
probeSmoothing          Compares, for a set of specified values of df
                        and different smoothing methods, a response and
                        the smooths of it, possibly along with growth
                        rates calculated from the smooths
rcontrib                Computes a measure of how correlated each
                        variable in a set is with the other variable,
                        conditional on a nominated subset of them
rcontrib.data.frame     Computes a measure of how correlated each
                        variable in a set is with the other variable,
                        conditional on a nominated subset of them
rcontrib.matrix         Computes a measure of how correlated each
                        variable in a set is with the other variable,
                        conditional on a nominated subset of them
splitContGRdiff         Adds the growth rates calculated continuously
                        over time for subsets of a response to a
                        'data.frame'
splitSplines            Adds the fits, and optionally growth rates
                        computed from derivatives, after fitting
                        natural cubic smoothing splines to subsets of a
                        response to a 'data.frame'
splitValueCalculate     Calculates a single value that is a function of
                        an individual's values for a response
tomato.dat              Longitudinal data for an experiment to
                        investigate tomato response to mycorrhizal
                        fungi and zinc
twoLevelOpcreate        Creates a data.frame formed by applying, for
                        each response, a binary operation to the paired
                        values of two different treatments
