# An Open-Source Loader for Bruker's timsTOF Data Files

## Documentation for package ‘opentimsr’ version 1.0.13

- DESCRIPTION file.

## Help Pages

CloseTIMS | Close the TIMS data handle and release all resources.
download_bruker_proprietary_code | Get Bruker's code needed for running proprietary time of flight to mass over charge and scan to drift time conversion.
explore.tdf.tables | Explore the contentents of the sqlite .tdf database.
length-method | Get the overall number of peaks.
min_max_measurements | Get border values for measurements.
MS1 | Get MS1 frame numbers.
OpenTIMS | Get OpenTIMS data representation.
OpenTIMS-class | TimsTOF data accessor.
opentims_set_threads | Set the number of threads to be used for data processing by OpenTIMS
peaks_per_frame_cnts | Get the number of peaks per frame.
query | Query for raw data.
query_slice | Query for raw data.
range-method | Select a range of frames to extract.
retention_times | Get the retention time for each frame.
rt_query | Get the retention time for each frame.
setup_bruker_so | Dynamically link Bruker's DLL to enable tof-mz and scan-inv_ion_mobility conversion.
table2df | Extract tables from sqlite database analysis.tdf.
tables_names | Extract tables from sqlite database analysis.tdf.
[-method | Get some frames of data.