# Minicircle Sequence Cluster (MSC) Analyses

## Documentation for package ‘rKOMICS’ version 1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

exData | Example dataset
matrices | Example cluster matrices
msc.depth | Check the read depth of assembled minicircles
msc.heatmap | Visualization of cluster matrices
msc.length | Length of minicircles
msc.matrix | Build cluster matrix
msc.pca | Prinicple Component Analysis based on MSC
msc.quality | Check the quality of the assembly
msc.richness | Minicircle Sequence Cluster richness
msc.seqs | Retrieve sequences
msc.similarity | Minicircle Sequence Cluster similarity
msc.subset | Specific MSC
msc.uc | Cluster Analyses
preprocess | Filtering of minicircle sequences
read.uc | Read in uc files
rKOMICS | Minicircle Sequence Cluster (MSC) Analyses