# Visualize the Basic Characteristics of Single-Cell Immune Repertoire

## Documentation for package ‘scImmuneGraph’ version 1.1.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BasicPlot | Draw a variety of diagrams
bcontig_list | Single chain immune repertoire dataset
BCR.CDR3ntLengthDistribution | CDR3 nucleic acid length distribution in the sample
BCR.ClonalStateDistribution | Distribution of clonal status of single-cell BCR clonotypes
BCR.ClonotypeComposition | The composition of single-cell BCR clonotypes in the sample
BCR.ContigList | Converting 10X genomics produced B cell contigs file(s) as a list outputed
BCR.JgeneAbundance | J gene abundance distribution in the sample
BCR.top100CDR3Abundance | #' Get the 100 most abundant CDR3
BCR.top100ClonotypeAbundance | Get the 100 most abundant clonotypes
BCR.VgeneAbundance | V gene abundance distribution in the sample
BCR.VJgenePair | VJ gene pair abundance distribution in the sample
tcontig_list | Single chain immune repertoire dataset
TCR.CDR3ntLengthDistribution | CDR3 nucleic acid length distribution in the sample
TCR.ClonalStateDistribution | Distribution of clonal status of single-cell TCR clonotypes
TCR.ClonotypeComposition | The composition of single-cell TCR clonotypes in the sample
TCR.ContigList | Converting 10X genomics produced T cell contigs file(s) as a list outputed
TCR.JgeneAbundance | J gene abundance distribution in the sample
TCR.top100CDR3Abundance | #' Get the 100 most abundant CDR3
TCR.top100ClonotypeAbundance | Get the 100 most abundant clonotypes
TCR.VgeneAbundance | V gene abundance distribution in the sample
TCR.VJgenePair | VJ gene pair abundance distribution in the sample