d6bea18922d7f5913a3e7cafc8324d40 *DESCRIPTION
82739dec3642ad002c394809bacd5f41 *LICENSE
3ebc690920ea1642ba9ecafb83e28436 *NAMESPACE
2b07e5470930d769c15d491ea73e4e26 *NEWS.md
f6171877b495eca1b1ac341096d3a323 *R/PhenotypeSimulator.R
bc3c480b8365c5166df8d6583c0a4a3e *R/RcppExports.R
d25f9f3c751eb1987230d3b807112b7a *R/commandlineFunctions.R
29bbabd27359dc721fb6b759f4676dfc *R/createphenotypeFunctions.R
5a0b260c805ca9feb668ce36bb7e3686 *R/genotypeFunctions.R
c459b484a83d661e86df9ce19775ee2a *R/outputFunctions.R
fd7f6fc0fedb4c3ae40912f3301cf37f *R/pkg.R
66b03f0386772da6856eb7745eb8b1a0 *R/utilityFunctions.R
53fc52aed85ac86a1ee4a1d871cbe4d9 *R/variancecomponentFunctions.R
9ffad5c59c4d68f8536d969cfb3a49f4 *README.md
11d27e948016e95def9e9119dbefae60 *build/vignette.rds
ac96d154c62aff553609585a1a99aa88 *inst/CITATION
93dbd273c7d9524522b7dc48524ff31f *inst/doc/PhenotypeSimulator.R
2a480dca3837971a3ae73ecfafa25a0a *inst/doc/PhenotypeSimulator.Rmd
e0644f4e1f696acf64b76b40f6e5bf40 *inst/doc/PhenotypeSimulator.pdf
1e48aa654da112d4240b24d1cc045b2b *inst/doc/Simulation-and-LinearModel.R
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db4b0d8575ef0d6bc5409ccf38fea6d8 *inst/doc/SimulationBasedOnExampleData.R
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69f98f4c64b531e5938dcbf8d4211fdb *inst/doc/SimulationBasedOnExampleData.pdf
1962fb8cf337fa5111f1701473c66642 *inst/doc/sample-scripts-external-genotype-simulation.R
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4361c6427aa2afd18b7790cbb31d3798 *inst/extdata/genotypes/genome/simulate_genotypes_genome.sh
4ddf93b28a86da3702b3fee78547bc79 *inst/extdata/genotypes/genotypes_chr22.bimbam
436af9d679b68de913a73ce072da1f18 *inst/extdata/genotypes/genotypes_chr22.csv
dececf7efb004e97acb10bb03e3083bf *inst/extdata/genotypes/hapgen/genotypes_hapgen.cases.gen
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8a635b353f7be96f67005eff813d5f76 *inst/extdata/genotypes/hapgen/genotypes_hapgen.summary
f9c13fdb9a72a8cbc9df21a036fa9333 *inst/extdata/genotypes/hapgen/genotypes_hapgen_chr22.gen
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3d4c16710de0129a353814bb3da5a76b *inst/extdata/genotypes/hapgen/simulate_genotypes_hapgen2.sh
edf52e47770e5e3489ea73b891385d0a *inst/extdata/genotypes/plink/genotypes_plink.bed
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38498fb811473bf1f88b23b7df59c80f *inst/extdata/kinship/kinship.csv
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4925088ca65fd000e8bf9d5f3c94a8f1 *inst/extdata/resultsSimulationAndLinearModel/gwas_results_gemma_qqplot.png
3c6bec726bd3e76aea762a08e645d9b9 *inst/extdata/resultsSimulationAndLinearModel/sigSNPs.csv
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c5f484d4032985ef1d4b49215a22044b *inst/extdata/resultsSimulationAndLinearModel/simulation_phenoComponentsFinal.rds
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ad826e96299c43064c4b477c832e1980 *man/PhenotypeSimulator.Rd
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7dd19cb9f7e03c60b6cf640ca4bc1525 *man/getCausalSNPs.Rd
2e855d0fa8d2386691a89a9da9f7e37a *man/getKinship.Rd
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5dd788905a105d735e17c20e45f6698d *man/readStandardGenotypes.Rd
43dd00cdc3232b8490765862a4b1a932 *man/read_lines.Rd
16071c29889f09f9220ddd84075660b6 *man/rescaleVariance.Rd
a9caad5a3156f3e5d775c9b3dce73b58 *man/runSimulation.Rd
3dcccf58681d7685e95d79327917fdec *man/savePheno.Rd
c23c81e54cc74bef7e5c9a0fd4605e9d *man/setModel.Rd
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926be1e67925125af41a905df8598135 *man/simulateGenotypes.Rd
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a0fbc74c945c58c32f0cd08bdbc5366f *man/standardiseGenotypes.Rd
87638ac5467bcb4dba45bcc336f8cdd4 *man/testNumerics.Rd
55f0edbe1de2b0b568c8e4fa64bbb1ce *man/transformNonlinear.Rd
8197117f8e09b5e7ab0033c2c8532175 *man/vmessage.Rd
2586a95bb6f8c7bb258a721ff848819d *man/writeStandardOutput.Rd
c573118db7f544eefaee5b82c5e04f9a *src/Makevars
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de936531dbd0dcef46f3ca484f9a8b06 *tests/testthat.R
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33642ac651893729304362fcae37880b *tests/testthat/test-createphenotypeFunctions.r
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2a480dca3837971a3ae73ecfafa25a0a *vignettes/PhenotypeSimulator.Rmd
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d1f430cbbc7c7eebf0ccee1d44961d5d *vignettes/SimulationAndLinearModel.bib
f540a02b274c1d3c86b68164fb2654c2 *vignettes/SimulationBasedOnExampleData.Rmd
2893066ab304e43b14461d8def2c1b10 *vignettes/Vignette-example-data.bib
1e766774e38863aaa6a379ed38f28754 *vignettes/cor_pheno-min.png
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4925088ca65fd000e8bf9d5f3c94a8f1 *vignettes/gwas_results_gemma_qqplot.png
2c678b25dbe4823676bd308c323565c3 *vignettes/plos-genetics.csl
630614156cff05a91892ca71457bda26 *vignettes/sample-scripts-external-genotype-simulation.Rmd
d28fc2fb9b327170d01cab1410b89310 *vignettes/sample-scripts-external-genotype-simulation.html
e447776c00fc397833cf5b9239ff0146 *vignettes/wallthickness-min.png
