9071abfc0008c734cd68cd9f37f98bff *DESCRIPTION
4971cbaeb7596fdfc1a54fa7977c712b *LICENSE
19d7bd6c1f0775a7f1b73c206289d586 *NAMESPACE
683953d840edce95b313b3064c10349a *NEWS.md
6733cc0bd7abb9edff8385ba77d07ade *R/asso_test.R
b3aa9ebf611f197a6982b44f39fd692f *R/comorbidity_asso.R
6a9ba70e02905328cb5cc7b5f0a3f980 *R/comorbidity_summary.R
c909c23cddb5d906c90a7920146b1fad *R/covid_example.R
17fb8b239bdecf30576ed09a2adeb7dc *R/data_reform.R
582145ca697fe298667299695743e923 *R/globals.R
a0f38fdb467d4380d47006e5f94298e5 *R/makeGWASFiles.R
bc510ea6a14810dbe4c0910ca0ab43b1 *R/makePhenotypes.R
de1f4a96f946121231bb3f3f98d25aea *R/risk_factor.R
89eddc51957fe2301977265500053326 *R/sampleQC.R
1d0eae33124134d049273d7ed47ed2eb *R/variantQC.R
c755cfc529fff40eb0d17873aefe745e *README.md
358ac89ace69ec1a8a102962cd42fccb *inst/GWAS/UKB.COVID19_GWAStutorial.Rmd
c128908d5a4def7d470be9fd4a3506fc *inst/GWAS/UKB.COVID19_GWAStutorial.html
10097a100649060d15efc1fd8a74462b *inst/extdata/ICD10.coding19.txt.gz
0aec4d75d8bbb11cef82f77944720563 *inst/extdata/alleleFreqs/ukb_mfi_chr10_v3.txt
8d42b5d296892fcfc3c746a37386f693 *inst/extdata/alleleFreqs/ukb_mfi_chr11_v3.txt
56803f415d8c060710404695d6124c31 *inst/extdata/alleleFreqs/ukb_mfi_chr12_v3.txt
c7b202e09eaf2a538ef5125e39e57f6e *inst/extdata/alleleFreqs/ukb_mfi_chr13_v3.txt
8777f2ebc72ec505a2df09a8a94ea8e4 *inst/extdata/alleleFreqs/ukb_mfi_chr14_v3.txt
c3a3416eef440ee5963fa28656c2366d *inst/extdata/alleleFreqs/ukb_mfi_chr15_v3.txt
fe8f2330f53dbf81619d99d10b0ae6dd *inst/extdata/alleleFreqs/ukb_mfi_chr16_v3.txt
279486a651913cddb087193c569b9db1 *inst/extdata/alleleFreqs/ukb_mfi_chr17_v3.txt
b3e4ad317d4c974d3a5000e7e4a4460e *inst/extdata/alleleFreqs/ukb_mfi_chr18_v3.txt
867cffe4a8f0336ce1f49cd5fa0c9565 *inst/extdata/alleleFreqs/ukb_mfi_chr19_v3.txt
dd1c0ca66bd545743e32b9b889367f1e *inst/extdata/alleleFreqs/ukb_mfi_chr1_v3.txt
707a4f01b9045c9aff9491907b6ce33a *inst/extdata/alleleFreqs/ukb_mfi_chr20_v3.txt
6d87d329ee332348ccf924d1f315808c *inst/extdata/alleleFreqs/ukb_mfi_chr21_v3.txt
12545a1aad39c3d2092132b20ff31a95 *inst/extdata/alleleFreqs/ukb_mfi_chr22_v3.txt
737304f07e2d023a0c80d6f7011c86cd *inst/extdata/alleleFreqs/ukb_mfi_chr2_v3.txt
fec63d51c3f9165af1fa2f5b145617b1 *inst/extdata/alleleFreqs/ukb_mfi_chr3_v3.txt
cc75982b5e8769a1a1988d907bd9207e *inst/extdata/alleleFreqs/ukb_mfi_chr4_v3.txt
dec26fa97255ab672c1e9260eb8517e4 *inst/extdata/alleleFreqs/ukb_mfi_chr5_v3.txt
9f381128a08b26f5e932ed357791fbee *inst/extdata/alleleFreqs/ukb_mfi_chr6_v3.txt
cbb333b099a5b370be205185135f7963 *inst/extdata/alleleFreqs/ukb_mfi_chr7_v3.txt
8210aaba5c6061044a4c6f5779476075 *inst/extdata/alleleFreqs/ukb_mfi_chr8_v3.txt
5b7a0b90c7fb1b81361a88684f576803 *inst/extdata/alleleFreqs/ukb_mfi_chr9_v3.txt
cd0867dff25da18cee6895a91c91a0aa *inst/extdata/alleleFreqs/ukb_mfi_chrXY_v3.txt
e6ffbc57cf87beff67dc7b4f8e30a410 *inst/extdata/alleleFreqs/ukb_mfi_chrX_v3.txt
ab181b31f7c95b428d55adb675cc3ae2 *inst/extdata/coding240.txt.gz
9d5483d219025a649d1f5380ed08d85e *inst/extdata/res_example.txt.gz
9e8d3ee391e77a2ac3873aef5965dc24 *inst/extdata/results/comorbidity_2020-3-16.txt
da8f1651105b212ebcc2c771cc8a9984 *inst/extdata/results/covariate.txt
63072015bc63a8564e9559b2c71ad598 *inst/extdata/results/hospitalisation.txt
e064c27c876725433f0b80abf5217668 *inst/extdata/results/phenotype.txt
c76030d8ffd799fb367684fb8125a9dc *inst/extdata/results/sampleExclude_SAIGE.txt
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5bf2714dd2f85f51f904361d927eb483 *inst/extdata/results/sampleGenoQC.csv
db60a846aef9b57dbf551b6d8981e4d7 *inst/extdata/results/sampleInclude_SAIGE.txt
a0e777fe166f658d4dfe70edd2f74c99 *inst/extdata/results/sampleInclude_plink.txt
936f03133c4cd8b58a703fecc153a881 *inst/extdata/results/snpIncludeRSIDs_minMaf0.001,_minInfo,0.5.txt
843e0ae0cdd5c6ba1f3ec58a9179de20 *inst/extdata/results/snpIncludeSNPIDs_minMaf0.001,_minInfo,0.5.txt
d495ef779a884c3c1743190d8848f131 *inst/extdata/results/snpsIncludeRSIDs_GRM.txt
9d099ec0c1ca1292de4160ac7dafdef8 *inst/extdata/sim_covid19_misc.txt.gz
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2aea7a754ac79b18caef37ed39656ae8 *inst/extdata/sim_death_cause.txt.gz
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559185232874c9c398744422ebe7c41c *inst/extdata/sim_hesin_diag.txt.gz
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4d5712e5e0d067bc48307cafa227547b *inst/extdata/sim_result_england.txt.gz
23771a189e2f779066b2a6bd81b6e781 *inst/extdata/sim_ukb.tab.gz
32162632e1dd64b86a7f7a58dc1d6dd4 *inst/extdata/sim_ukb_snp_qc.txt.gz
1244323c728f65babbc4f13ed29c4830 *inst/extdata/sim_withdrawn.csv.gz
a958b0ac8b480f6da1850dd944342208 *man/comorbidity_asso.Rd
7031fd98adbf8d7d8b38424cdde79582 *man/comorbidity_summary.Rd
1050e93ad90c162ca624c6ac09c57f87 *man/covid_example.Rd
379ca644468d6221469e5dbd84358798 *man/data_reform.Rd
97d34f40f1a5e0f865feb5e8b1b990d4 *man/log_cov.Rd
d246a7de2edf9cccce11ff1f4212d44c *man/makeGWASFiles.Rd
2bf4c3a39a74aef17f4c499e1a7fdbbe *man/makePhenotypes.Rd
99a3bac56a3911f747046a5ac5e56a6e *man/risk_factor.Rd
cb3821250a19653f6b0327dc85525008 *man/sampleQC.Rd
4f513fb28c1b8e25db187c0ca33827c7 *man/variantQC.Rd
badfcc9e4992d5d87851f05497708f92 *tests/testthat.R
2c44f2ac41284b436f82c4d9f410b8d5 *tests/testthat/test_asso_test.R
8318eec36f989efefa06444994026c37 *tests/testthat/test_comorbidity_asso.R
7d7218da91bdc5937aeb6514a6e9266c *tests/testthat/test_comorbidity_summary.R
054e37aa50118111ea45450dc2f68a68 *tests/testthat/test_makePhenotypes.R
ec4d346bfe91ce4f08e0f9f76a2750ce *tests/testthat/test_risk_factor.R
