557558f5c8c8a3b2c78c8764d70e971a *DESCRIPTION
9e98f48f278daae9e301ff57dd85baf6 *NAMESPACE
e52d40de3b17013e7e54440d06c3b0ed *NEWS.md
42ac3ec3df07926ae313726dc1e3d617 *R/NegLogInt_Fn.R
1ff091ab8fff2da918f8462f6fefdbec *R/PinerPlot.R
2df2c86ea0e9afb5713a06092096bf6c *R/RebuildPlot.R
7a9d9253f89c6b02924a287c8af49a3a *R/SSMethod.Cond.TA1.8.R
c1be06130f7a41521edaa907e0676ae5 *R/SSMethod.TA1.8.R
38dc761b791c6efb3d62bb6a9965d753 *R/SS_ForeCatch.R
4ae31fbccc581d0bb26541fcd843f895 *R/SS_RunJitter.R
03d993994d76688266708fc76ad82a41 *R/SS_changepars.R
2a06a1dbed488589dd846136188ff617 *R/SS_decision_table_stuff.R
b9b902ffb796b151a441a68da29650fb *R/SS_doRetro.R
84563f5c6d4f4f13561e31fadd6ea79a *R/SS_fitbiasramp.R
f67e09a0124b1c02665ac541e4c868c3 *R/SS_html.R
c9736bf8c0732268a60c1246df1f0b12 *R/SS_makeHTMLdiagnostictable.R
c6b40139c77499efe33140e88fbf36db *R/SS_makedatlist.R
b79333f7af9dbb49f7b42193dea601b8 *R/SS_output.R
007309f03df85d70dc0cb0d77641d803 *R/SS_parlines.R
ff5553ce3b0fdbc002d4fcb39f0de953 *R/SS_plots.R
65a6e408cd5ce9d9ed7de725914f7f63 *R/SS_profile.R
e082d2ee3c18aae877f0b695d4e96e2f *R/SS_read_summary.R
fc80a32f86d09997670fe83541cc78a0 *R/SS_readctl.R
0592a79d02bdba274daa3f69192e560e *R/SS_readctl_3.24.R
6b132f71e882e83b9b1c362347c1503a *R/SS_readctl_3.30.R
e74bc7d1ae25ad96ff62aa651158a9c6 *R/SS_readdat.R
67bed6ddddf225d328292eaef0cd963e *R/SS_readdat_2.00.R
fb71ab6181dc58fc44327b389689a071 *R/SS_readdat_3.00.R
9f9e949777833d2d8e3c1392363f46e0 *R/SS_readdat_3.24.R
a9f346df82b768fd9ddd5ba584f7fdd8 *R/SS_readdat_3.30.R
041666c2d96cff2484e64a8bb73a3887 *R/SS_readforecast.R
30b8763fc93a4d1d0b39a9c46e4f53d7 *R/SS_readstarter.R
b01ae6856b2bee0410f21ac5d24ef76e *R/SS_readwtatage.R
ac4029206741d0b046ff463c028effda *R/SS_recdevs.R
99740d4246bb6dfe15480a610126efdc *R/SS_splitdat.R
d1b6e7686b70602883d164aa1f7e07af *R/SS_tune_comps.R
8223e556bc0af559871b4f489475248d *R/SS_varadjust.R
727fb4a42d22646c8a46ef9a0cbf1e88 *R/SS_writectl.R
1647bf4a0f2bd8c644860bfa3bedb56d *R/SS_writectl_3.24.R
323037b3e752d717cf7bc0b64fbfa221 *R/SS_writectl_3.30.R
497e14d560f6b319ed6e7a4e24653db4 *R/SS_writedat.R
d7dfd80968832ddb1e70db7dac29e451 *R/SS_writedat_3.24.R
a11b68fc8d8e5491fbf482a4c8ba2c2f *R/SS_writedat_3.30.R
54501dadcf70794282f1632c8600da46 *R/SS_writeforecast.R
c3dcd04caf69b068ce53c42168f20e32 *R/SS_writestarter.R
d13163892ac8e4185c1d3d3af778ab10 *R/SS_writewtatage.R
c1274856e00b46e321d120f3e5938f71 *R/SSbiologytables.R
3f061e8e28e8a6c39a660bd1146a5ac7 *R/SSbootstrap.R
8c263289f3ecd133ce9956588dea9817 *R/SSexecutivesummary.r
eb0977c35495a214f15761e4459c532c *R/SSgetMCMC.R
4097af4cfdb2d192f8dd1dc2a1b31419 *R/SSgetoutput.R
d0662a05e161670b15c02d4a262e7b68 *R/SSmakeMmatrix.R
3eb2a9668354d7a5ec801a1e8269076d *R/SSmohnsrho.R
73c9592a18f981fc4dc31a7ddc4b3610 *R/SSplotAgeMatrix.R
b9f96b617b2bccf796bf63a54db745a1 *R/SSplotBiology.R
295fdb1abf2bc2bdb3590a08fac66a90 *R/SSplotCatch.R
d3fe87cfe66c87c23899f74af8e13095 *R/SSplotCohortCatch.R
dcb3dd63c48360d2812423095542df09 *R/SSplotComparisons.R
34201f47c22b2afadd47b36482cb77b5 *R/SSplotComps.R
212d2ae1202c7f0384bcaf7d12cd259b *R/SSplotData.R
e50f040eae18e701811b2d96c435d4cd *R/SSplotDiscard.R
eaa4ee88618563ee86c8780b51a8d07b *R/SSplotIndices.R
48ff0581d5f0ff39034318ac928875e5 *R/SSplotMCMC_ExtraSelex.R
670bae0111284080d4cd2bc161fce5d6 *R/SSplotMnwt.R
1ec29ff051d5532894908c62c5413b01 *R/SSplotMovementMap.R
c3d68e74a1791da21eba101af50e3b99 *R/SSplotMovementRates.R
972b40fe782f3253fe7b07cc3e96a2a3 *R/SSplotNumbers.R
9da7241617d018931aecaeca64d67f92 *R/SSplotPars.R
e2e0aea8c859ff9b75f6172b491b65be *R/SSplotProfile.R
a44bc1dae49c1eac4a6840fc12f92346 *R/SSplotRecdevs.R
127c1c260021908abf30476f4bbbbfd3 *R/SSplotRecdist.R
167cd535ab266aa3f039a4b7e9af78b9 *R/SSplotRetroDevs.R
98ce6b125852273daa4fb19c54514f46 *R/SSplotRetroRecruits.R
a35cf249cd6692046f8e1608b7037ef4 *R/SSplotSPR.R
12418f449693e2d91ae6bedb9ae9841e *R/SSplotSelex.R
619d019cec3b452f7c5f85aca18ae4be *R/SSplotSexRatio.R
f63637ee9cf160f26b3fe768a5601e79 *R/SSplotSpawnrecruit.R
cd6bd4d52f9fc00e8bd839411eb1e59e *R/SSplotSummaryF.R
7bb2a2a6002c14accd9f7ee5128c60dd *R/SSplotTags.R
a08b0dd1faafc2255fd4ae44343a9156 *R/SSplotTimeseries.R
c2294cc80e407e939d964557bf9ca325 *R/SSplotYield.R
f27e7bb25944d1952840001c12bcb425 *R/SSsummarize.R
4262d17ccc53449d003a81d5bab7af8b *R/SStableComparisons.R
2ec9525eaf046170cca39cf9aebcde1e *R/SStimeseries.R
b4c949fe177cd4b364c31c559f70ee89 *R/SSunavailableSpawningOutput.R
c1685e4329a5b8a8add8498018f802f2 *R/TSCplot.R
28c9fb852667e5f4e7e7b2fb9ca672a9 *R/bubble3.R
8b417114554a3ec67f8f236c8312997e *R/getADMBHessian.R
85423341120be516ec650c0d7e4734e5 *R/make_multifig.R
5674ef89aca66e1aaf0d7470fc868041 *R/make_multifig_sexratio.R
778fa7cc0c8fcced309b68607a3e67c1 *R/mcmc.nuisance.R
223a9255779e47cec884536799348d76 *R/mcmc.out.R
d4d7e9411b54b55c9994ef5f1d7e89cd *R/mountains.R
9b03693adb73eda358e431b7bdfe66b3 *R/plotCI.R
aa1c7a4ce486d351a72ed5e1b16822cc *R/r4ss-package.R
d3f591c5a88271c1315aee32e6303af0 *R/r4ss_logo.R
391751c2efb3a6f92786e19357a32387 *R/read.admbFit.R
baa57df70fc9339030b031cb250b6332 *R/rich.colors.short.R
332003c5a609334077aed3b431c0e270 *R/selShapes.R
d294eeb2e9e9cf318a9271c371c0d573 *R/stackpoly.R
765085ca703fade988ecf02ef3e7c304 *README.md
cc4aec9758ec09e0dd45266786133b6d *build/vignette.rds
185894ca79714b2ef89ca201437cf1dc *inst/Shiny/Selectivities/server.R
27f05d068f66942132efcd7ca2755846 *inst/Shiny/Selectivities/ui.R
d02f42240880a8eef36a1ef224fea761 *inst/doc/r4ss-intro-vignette.R
c759668ffffc47803070fc1a3cbc0b15 *inst/doc/r4ss-intro-vignette.Rmd
9e8000ea585e9e969a9b5c453394df0b *inst/doc/r4ss-intro-vignette.html
6f46845a101096119d47f14c99e41d62 *man/DoProjectPlots.Rd
2de4901e21927ba9f27d2a8a73c6dcc0 *man/NegLogInt_Fn.Rd
98ecdd09b54b89f751cdaa8c24105c13 *man/PinerPlot.Rd
92b5556af6e66a8dc88dc901aa5a64ef *man/SSMethod.Cond.TA1.8.Rd
ffd0d12ba6aa8728cd5401ef004c6b60 *man/SSMethod.TA1.8.Rd
d1d917de733de04089899103729fa57d *man/SS_ForeCatch.Rd
f84e58b094fb1c63584b34f70081e838 *man/SS_RunJitter.Rd
ffc1500521eae628bfbb86df6ef2a178 *man/SS_changepars.Rd
cdbb630e9937fa4d5638a90701160534 *man/SS_doRetro.Rd
87e32c5ea0d59d498a6a43f3fe5f49d2 *man/SS_fitbiasramp.Rd
6a32b212c5c91a4e5313d45d1eb968c8 *man/SS_html.Rd
1795c1a5ede0196f34a759465cf3c674 *man/SS_makeHTMLdiagnostictable.Rd
9d4c42d38441b90976fa7940c42853c0 *man/SS_makedatlist.Rd
01c69c08600179a06e440c4335ba6912 *man/SS_output.Rd
fe300f88789a125b14844cee14fb2acc *man/SS_parlines.Rd
f2b7f3c8c0260c71ada5f1c479046f4d *man/SS_plots.Rd
8c0a461fc4bab659da56119bd48f19cf *man/SS_profile.Rd
f3007a99b108d5f80d8c3c71f657ace7 *man/SS_read_summary.Rd
7f4b5c34c3b3e86c6d1f07c34eb974e7 *man/SS_readctl.Rd
df77c752a3e8221694429aee76a8c568 *man/SS_readctl_3.24.Rd
502530f6d459fa9a90ca772b3d58e4e5 *man/SS_readctl_3.30.Rd
1347405698c4ac4e5ff42dd7eed8bf55 *man/SS_readdat.Rd
3e226e91c876b49917e5e47f6dcc15dc *man/SS_readdat_2.00.Rd
53d2f0c8e3395c88eccb2c3381b5ab76 *man/SS_readdat_3.00.Rd
fd089608b32f1703da8741dc724b8d3b *man/SS_readdat_3.24.Rd
5aee330b17532ba43aefbd642eaa7ce3 *man/SS_readdat_3.30.Rd
6235146841065f5dfdd8ffb2da1af535 *man/SS_readforecast.Rd
ab0d01c28499758bc8f99a23eaf1380a *man/SS_readstarter.Rd
e07016c76900a2fcb84f4e6c038babe8 *man/SS_readwtatage.Rd
ab6ea42fff0147c66456fcc200c71b2c *man/SS_recdevs.Rd
c6569ea868f098fa9542267c0f247e32 *man/SS_splitdat.Rd
a4ce18d72a4491438abf4c773e3bb939 *man/SS_tune_comps.Rd
45cf12a7addc2d3d0dd7e8a270bc7ec8 *man/SS_varadjust.Rd
79a9b91861dd8f6ddda13af2b3b03720 *man/SS_writectl.Rd
715adf9af393b97cff5049e88e1e0b20 *man/SS_writectl_3.24.Rd
7d2af8cd32f47288060a3f5cea5994d7 *man/SS_writectl_3.30.Rd
813f6d0c16e6edeb2bb7b115c37d9d9d *man/SS_writedat.Rd
ee8380f267ada87dad72783050da0243 *man/SS_writedat_3.24.Rd
02526ad750a3cea5d4a73c773f2ab846 *man/SS_writedat_3.30.Rd
22215c48f96bf70b01e3b0e7424ebf17 *man/SS_writeforecast.Rd
8e1bd463a132f965a3d5b13aeacadf9c *man/SS_writestarter.Rd
a239e78181a05718a0b13dc75fab28bb *man/SS_writewtatage.Rd
50e705f624a5290cfb15f8523dc5fe95 *man/SSbiologytables.Rd
81c0ef0e44b4dee00ac36691a70dada6 *man/SSbootstrap.Rd
bf9a929068fe500829b789a11f7bbbda *man/SSexecutivesummary.Rd
3ea1aad89df317b26928a0a76f7cdc9a *man/SSgetMCMC.Rd
5471b37650861551c8de5fc49f71ec3d *man/SSgetoutput.Rd
1d66e61f994cfd07c419f6d297525d59 *man/SSmakeMmatrix.Rd
2a4f8818daeb3c17e54396a5dfd58c48 *man/SSmohnsrho.Rd
1446aec1941c924ab72208c7da010436 *man/SSplotAgeMatrix.Rd
a9e913825fa14aa96aa7e99c09aee38b *man/SSplotBiology.Rd
c6e8bf357434da34743a609d7a1392d3 *man/SSplotCatch.Rd
71de3c7039d21b0082ab109bfee48ff0 *man/SSplotCohortCatch.Rd
72f654c9f82ec78866e93e888726d895 *man/SSplotComparisons.Rd
1bc62ede7826c004ca099193f33a8f87 *man/SSplotComps.Rd
111967a32387f408c0c2627296e54540 *man/SSplotData.Rd
e90be94b3cc611f5fa67ba95e73d3bc7 *man/SSplotDiscard.Rd
85794e108c738f03f95397c7e7f50717 *man/SSplotIndices.Rd
7771b6a71f17b376e2b22aa3fde1bbd4 *man/SSplotMCMC_ExtraSelex.Rd
73ffb2cbb424ab77669bb83059c65502 *man/SSplotMnwt.Rd
dd88107477ce2b05c716e050dbe31d1e *man/SSplotMovementMap.Rd
d3bf89b85059536956ef1702cd71a515 *man/SSplotMovementRates.Rd
07758d1601592c0d864788f8134403c6 *man/SSplotNumbers.Rd
d8eaf644f9ab5b65fe434e77a3c1a125 *man/SSplotPars.Rd
a2a2bfe9231b852c0528494698417e1d *man/SSplotProfile.Rd
efa094e7e1647f53886f68927fbba307 *man/SSplotRecdevs.Rd
0c40fafabb1d5b34a120c5cfb6af6323 *man/SSplotRecdist.Rd
f7bb57bc4c961d6703e4fed9199f35e9 *man/SSplotRetroRecruits.Rd
f94f34a1bb54f4569396fd641064a12c *man/SSplotSPR.Rd
63b04bf9368ecdf2ddc01cfdd2e07c2f *man/SSplotSelex.Rd
427993e9028e164e8eaa1862dfe5ca18 *man/SSplotSexRatio.Rd
c3f043558e47101a202c51dd8d63ec64 *man/SSplotSpawnrecruit.Rd
816de629321b261bb7814b72e299fd32 *man/SSplotSummaryF.Rd
96348aefed7b87324691e66c433408e0 *man/SSplotTags.Rd
c77ae84069d89e6840bbe2dd40c36447 *man/SSplotTimeseries.Rd
d94027282be079111f2ddd55d4c4c9e1 *man/SSplotYield.Rd
c9e7cdb5956c11527d375bf601cb2fcd *man/SSsummarize.Rd
7c468dae6936ee9ef988e8868e8a95b1 *man/SStableComparisons.Rd
ce5a05dec4fbc53f5a2f29796a311800 *man/SStimeseries.Rd
10738d00edfca82b01d981d9c03d80a3 *man/SSunavailableSpawningOutput.Rd
9557eb57d5d58785dff1ebb995a50ed3 *man/TSCplot.Rd
69a925021322136c16bddf8bd76f7046 *man/bubble3.Rd
6c7e2be04f8cd7904e3c69a52e03450c *man/getADMBHessian.Rd
9257d638161fb834b3d97a1a1dc8c964 *man/make_multifig.Rd
7634f68d76ec1d1619d974c73b326d42 *man/make_multifig_sexratio.Rd
cd8f4b092bcb9bb229a6400c635f3a25 *man/mcmc.nuisance.Rd
67936ed3c62b8a1306bd609308d8a58c *man/mcmc.out.Rd
477de5f5ba8d945b44a1b9e360612ee4 *man/mountains.Rd
a5f636d9080d9ad60651eef26d1a1f51 *man/plotCI.Rd
f33f5fc42363c48465825ebde86c2d04 *man/r4ss-package.Rd
03f5f6fb427cb2f1836002c7f439b75d *man/r4ss_logo.Rd
83a82418cd0892d6b3981079f5b2778b *man/read.admbFit.Rd
c364dd42c6d8c7135b555bf4cab32c8c *man/rich.colors.short.Rd
e067088c2a1a8befd1a0de7aee3609dc *man/selShapes.Rd
33f3aa1304e6432b0b4ecc0edfad9c5a *man/stackpoly.Rd
c759668ffffc47803070fc1a3cbc0b15 *vignettes/r4ss-intro-vignette.Rmd
083b672c7b170384c7191397a545c387 *vignettes/r4ss_html_capture.png
