f3dc9c97ebacf6b530d63ce8afac985f *DESCRIPTION
6a96bda69abe2435ee3e8886b3519eae *NAMESPACE
955278de53b0db9faed34a487c854671 *R/RcppExports.R
0a54fe16d90e2c2e59d5419726b34036 *R/data.R
19f100f811081131ac2592b54aba27b5 *R/dist_learn.R
ebfb5303e80d1a5dd13b87c053ce6bb4 *R/dist_learn2.R
b9ee7b4b4ff112ff2392794edf99f59e *R/dist_learn3.R
7b616e9c9869f8d25a28eff64129dfbb *R/fasthmmfit.R
d082ad896bfa56ffcda102cfdeb10ba3 *R/fasthmmfit.cont.R
e2724de9ee9328fb225c92b166a98318 *R/fasthmmfit.cont3.R
f045fbb8c2a23527bdf0175d3d916803 *R/fasthsmmfit.R
ac750ce8df72addc3d70001d3085bd01 *R/hmmfit.R
9fcd95487601482a61eec91633e6b2e2 *R/hmmsim.R
aac61fe4a88ae0992e42e342f2e2f446 *R/hmmsim.cont.R
d4fcece40775d0182714dd36062aa135 *R/hmmsim2.R
84f55ca8e44b9caa5592c2887df75d6b *R/hmmsim2.cont.R
11b647082fa95a4b1deff6d63ee2b45c *R/hmmsim3.cont.R
c0731460051304ed5d9b14c6f6169be2 *R/hmmsmooth.cont.R
333ebb91ee6fbe3d98bc38d1372d3d08 *R/hmmsmooth.cont2.R
eb98592b5fe08ff0130e4dd5c63f9c64 *R/hmmsmooth.cont3.R
cfab7816caa479f0cc2dbc9c4ec4004d *R/hmmviterbi.R
a43a6c0eee2b7868bcba4efe965e3f79 *R/hmmviterbi.cont.R
b43073cdf244ab7d073a7adb79133b8e *R/hmmviterbi2.R
483363514a90233d15a2274e97622208 *R/hmmviterbi2.cont.R
b0f59f6e1e980f17967a9c0f84fbfc50 *R/hsmmfit.R
66613ff4f9099d8be0e80580169bb4f2 *R/hsmmfit_exp.R
a6364822fecad8db97554c3c721dc74c *R/hsmmsim.R
4f3c34d41d1fc5d5b5be88894586ebcf *R/hsmmsim2.R
cc59c8978c4fe9e5a6963d151654ca37 *R/hsmmsim2_exp.R
4c0f826c3d908e357c5a036349214354 *R/hsmmviterbi.R
268cc90ebb7dbbb4242cb3a505d624c9 *R/hsmmviterbi2.R
30574124465c9bb59223ea13a3b7032e *R/hsmmviterbi_exp.R
c56a4762e726c895ce30f2d44f73f5bb *R/package.R
b74ca81160d84f9bd8ca8f86bb418097 *data/CAT.RData
03a761120f7dc287e4f533b322d6d170 *man/CAT.Rd
fbc08b79728aebba414cd71ce59027f9 *man/convolution.Rd
631fa7eda1e31d78e5cdef7af772ceeb *man/dist_learn.Rd
eaa08a08f8d2e9f4bfe1b0d4e01fb223 *man/dist_learn2.Rd
9af5ef071f6790a8660008711c33c9e5 *man/dist_learn3.Rd
500072fd0abd9767961878361e621e88 *man/dzip.Rd
f304edc6cc38b28ab6d21403e95671e2 *man/fasthmmfit.Rd
c9916c5d7ab7b1e02822a781de1170ad *man/fasthmmfit.cont.Rd
377b9dfa46c553e58b36080ad38a8230 *man/fasthmmfit.cont3.Rd
399b5851de00ec688c5d89e811d521ba *man/fasthsmmfit.Rd
bb5a237fbf212cb9651056ff63d7e53a *man/grad_zipnegloglik_cov_cont.Rd
3978e878f7f717308e16ce94cf9753bd *man/grad_zipnegloglik_nocov_cont.Rd
742ab00555819bb96d1ec115706a928f *man/hmmfit.Rd
d87f6bd259664317b34fc4ea8a74dc0e *man/hmmsim.Rd
f82060144ddec4a2ae731accdb1f3292 *man/hmmsim.cont.Rd
ddfbb078de92eccef26b905add1f56f9 *man/hmmsim2.Rd
d744ee01ebd74b5d86d83b2813a3908e *man/hmmsim2.cont.Rd
04363723fbe9091c23bf87abcee5c707 *man/hmmsim3.cont.Rd
91097fd3125216d2f82ea2e8e3a12c85 *man/hmmsmooth.cont.Rd
eb8f9e4e945087ace445b67d6d7f6dad *man/hmmsmooth.cont2.Rd
a6b54532d659cca990fc404ea23ac4fe *man/hmmsmooth.cont3.Rd
18b9cb63cc4b189e2e97b8c16dd629b9 *man/hmmviterbi.Rd
96cc2f513c71587c82fb26877f5ac3ac *man/hmmviterbi.cont.Rd
ceeacc43222963486cd97f9af0d326b4 *man/hmmviterbi2.Rd
89ab516824eed3724eb2c9d74bec9c92 *man/hmmviterbi2.cont.Rd
e1610c8a60f2b77c94b672275ab3afc5 *man/hsmmfit.Rd
7a1e4d1b9d8fe831b5efd090222eac65 *man/hsmmfit_exp.Rd
f10053ba5610f6e49ca61b27d0f42833 *man/hsmmsim.Rd
13848073fc4a2badc967304d248b680d *man/hsmmsim2.Rd
f069574cae629a555bc2ef4d8c714f38 *man/hsmmsim2_exp.Rd
6c206a51942efbb69cbdde463570e856 *man/hsmmviterbi.Rd
2c903ff0ce90f7d8504356d57e135dcc *man/hsmmviterbi2.Rd
18b5765e8ad8f100f390f12baebb3702 *man/hsmmviterbi_exp.Rd
baf021cf3c0d5bfa0fb00a0c2d42d848 *man/package-ziphsmm.Rd
139cee8690013969506ece929ffbd7cc *man/retrieve_cov_cont.Rd
b484e4cd24db814f1a7621e3eeb574ae *man/retrieve_cov_cont3.Rd
5809c2c52ca8c9086a7fb16ebc9807ae *man/retrieve_nocov_cont.Rd
6cb756350ca86fd0d610e056969b9e2c *man/rzip.Rd
173d0c922da1e4473a06a3747e116eb4 *man/zipnegloglik_cov_cont.Rd
cc1228674cd9e33fe275ba97f57842ec *man/zipnegloglik_cov_cont3.Rd
7aef2a1ed91887d195a2e096bff47b52 *man/zipnegloglik_nocov_cont.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
8d46d69896a1f1d31ed76035a0e49d67 *src/Makevars.win
e7540b993012fe8b80a098ab41e81b17 *src/RcppExports.cpp
78b26ff4417b6ec7c6fdc67490bd1d62 *src/init.c
5d84ecfa34962df8da44fa7bb25594f4 *src/rcpparma_hello_world.cpp
