Last updated on 2022-04-24 03:52:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 327.71 | 240.97 | 568.68 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 285.87 | 191.38 | 477.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 812.83 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 753.47 | NOTE | |||
| r-patched-linux-x86_64 | 1.0.0 | 316.02 | 246.12 | 562.14 | NOTE | |
| r-release-linux-x86_64 | 1.0.0 | 319.78 | 234.89 | 554.67 | NOTE | |
| r-release-macos-arm64 | 1.0.0 | NOTE | ||||
| r-release-macos-x86_64 | 1.0.0 | NOTE | ||||
| r-release-windows-x86_64 | 1.0.0 | 271.00 | 303.00 | 574.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.0 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.0 | 743.00 | 406.00 | 1149.00 | NOTE |
Version: 1.0.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'MicrobeDS'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [41s/61s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fido)
Attaching package: 'fido'
The following objects are masked from 'package:stats':
coef, predict
The following objects are masked from 'package:base':
as.list, print, summary
>
> #Sys.setenv(KMP_DUPLICATE_LIB_OK="TRUE")
> test_check("fido")
[1] 0.26738311 -1.33899224 -1.95254265 -0.39756655 1.45751012 0.47103711
[7] -0.07330334 -0.67012098 0.47146609 0.07345265 0.92503361 -0.48350069
[13] 0.51575599 1.72057504 0.35913823 -0.93582313 0.08997179 -1.25088705
[19] 2.09533524 1.65877854 1.15003740 -0.41454491 0.09000240 -0.64545842
[25] -0.81255099 -1.26856240 -0.09077535 -0.83598965 -0.33241904 -1.69035423
[31] 0.32998255 -0.99489425 -0.20686376 -1.19680237 1.03943725 0.43274564
[37] 0.91756540 -1.39098685 0.19734837 0.18875884 1.04465353 0.82502785
[43] 0.74184491 0.65619155 0.96359744 0.03777181 -0.37204029 0.68051191
[49] 1.79517888 1.75673956 0.35132040 0.04997461 0.98178461 0.92701292
[55] -0.51789541 -2.00438751 -1.16109241 0.15551298 -1.03084075 1.51301713
[61] -0.58127074 -0.83805808 -0.31858620 0.65248905 0.40097135 -0.72021206
[67] -0.69376655 -0.86873594 -0.44130140 -1.87776137 -0.89115386 0.17730768
[73] -1.30531872 1.83828749 0.93461013 -0.17374887 0.11519000 1.22191602
[79] 0.30440721 1.50324937 -0.11819094 -1.29300475 -0.49011831 1.88132747
[85] 0.27903116 -1.90620429 0.91410234 -0.96518859 -1.80668953 -0.03680587
[91] 0.74472691 1.51204049 -0.56321108 -1.90504551 -0.15591045 -0.54662247
[97] 0.93615588 -0.87247147 -3.33565054 0.13041702
$data
# A tibble: 16 × 9
Parameter coord covariate val .lower .upper .width .point .interval
<chr> <fct> <fct> <dbl> <dbl> <dbl> <dbl> <chr> <chr>
1 Lambda clr_c1 x1 4.59 4.34 4.85 0.5 mean qi
2 Lambda clr_c1 x2 -1.49 -1.78 -1.19 0.5 mean qi
3 Lambda clr_c2 x1 -6.50 -7.04 -5.91 0.5 mean qi
4 Lambda clr_c2 x2 -0.0101 -0.469 0.441 0.5 mean qi
5 Lambda clr_c1 x1 4.59 4.11 5.08 0.8 mean qi
6 Lambda clr_c1 x2 -1.49 -2.07 -0.946 0.8 mean qi
7 Lambda clr_c2 x1 -6.50 -7.58 -5.43 0.8 mean qi
8 Lambda clr_c2 x2 -0.0101 -0.880 0.857 0.8 mean qi
9 Lambda clr_c1 x1 4.59 3.83 5.30 0.95 mean qi
10 Lambda clr_c1 x2 -1.49 -2.37 -0.549 0.95 mean qi
11 Lambda clr_c2 x1 -6.50 -8.23 -4.89 0.95 mean qi
12 Lambda clr_c2 x2 -0.0101 -1.35 1.38 0.95 mean qi
13 Lambda clr_c1 x1 4.59 3.53 5.61 0.99 mean qi
14 Lambda clr_c1 x2 -1.49 -2.76 -0.238 0.99 mean qi
15 Lambda clr_c2 x1 -6.50 -8.92 -4.41 0.99 mean qi
16 Lambda clr_c2 x2 -0.0101 -1.69 1.88 0.99 mean qi
$layers
$layers[[1]]
geom_interval: orientation = NA, interval_size_range = c(1, 6), interval_size_domain = c(1, 6), na.rm = FALSE
stat_identity: na.rm = FALSE
position_identity
$layers[[2]]
geom_point: na.rm = FALSE
stat_identity: na.rm = FALSE
position_identity
$scales
<ggproto object: Class ScalesList, gg>
add: function
clone: function
find: function
get_scales: function
has_scale: function
input: function
n: function
non_position_scales: function
scales: list
super: <ggproto object: Class ScalesList, gg>
$mapping
Aesthetic mapping:
* `x` -> `.data$val`
* `y` -> `.data$coord`
* `xmin` -> `.lower`
* `xmax` -> `.upper`
$theme
List of 93
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..$ colour : chr "black"
..$ size : num 0.5
..$ linetype : num 1
..$ lineend : chr "butt"
..$ arrow : logi FALSE
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_line" "element"
$ rect :List of 5
..$ fill : chr "white"
..$ colour : chr "black"
..$ size : num 0.5
..$ linetype : num 1
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_rect" "element"
$ text :List of 11
..$ family : chr ""
..$ face : chr "plain"
..$ colour : chr "black"
..$ size : num 11
..$ hjust : num 0.5
..$ vjust : num 0.5
..$ angle : num 0
..$ lineheight : num 0.9
..$ margin : 'margin' num [1:4] 0points 0points 0points 0points
.. ..- attr(*, "unit")= int 8
..$ debug : logi FALSE
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
$ title : NULL
$ aspect.ratio : NULL
$ axis.title : NULL
$ axis.title.x :List of 11
..$ family : NULL
..$ face : NULL
..$ colour : NULL
..$ size : NULL
..$ hjust : NULL
..$ vjust : num 1
..$ angle : NULL
..$ lineheight : NULL
..$ margin : 'margin' num [1:4] 2.75points 0points 0points 0points
.. ..- attr(*, "unit")= int 8
..$ debug : NULL
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
$ axis.title.x.top :List of 11
..$ family : NULL
..$ face : NULL
..$ colour : NULL
..$ size : NULL
..$ hjust : NULL
..$ vjust : num 0
..$ angle : NULL
..$ lineheight : NULL
..$ margin : 'margin' num [1:4] 0points 0points 2.75points 0points
.. ..- attr(*, "unit")= int 8
..$ debug : NULL
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
$ axis.title.x.bottom : NULL
$ axis.title.y : list()
..- attr(*, "class")= chr [1:2] "element_blank" "element"
$ axis.title.y.left : NULL
$ axis.title.y.right :List of 11
..$ family : NULL
..$ face : NULL
..$ colour : NULL
..$ size : NULL
..$ hjust : NULL
..$ vjust : num 0
..$ angle : num -90
..$ lineheight : NULL
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.. ..- attr(*, "unit")= int 8
..$ debug : NULL
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
$ axis.text :List of 11
..$ family : NULL
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..$ size : 'rel' num 0.8
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..$ angle : NULL
..$ lineheight : NULL
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..$ debug : NULL
..$ inherit.blank: logi TRUE
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$ axis.text.x :List of 11
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.. ..- attr(*, "unit")= int 8
..$ debug : NULL
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
$ axis.text.x.top :List of 11
..$ family : NULL
..$ face : NULL
..$ colour : NULL
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..$ hjust : NULL
..$ vjust : num 0
..$ angle : NULL
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..$ margin : 'margin' num [1:4] 0points 0points 2.2points 0points
.. ..- attr(*, "unit")= int 8
..$ debug : NULL
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
$ axis.text.x.bottom : NULL
$ axis.text.y :List of 11
..$ family : NULL
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..$ margin : 'margin' num [1:4] 0points 2.2points 0points 0points
.. ..- attr(*, "unit")= int 8
..$ debug : NULL
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
$ axis.text.y.left : NULL
$ axis.text.y.right :List of 11
..$ family : NULL
..$ face : NULL
..$ colour : NULL
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..$ margin : 'margin' num [1:4] 0points 0points 0points 2.2points
.. ..- attr(*, "unit")= int 8
..$ debug : NULL
..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
$ axis.ticks : list()
..- attr(*, "class")= chr [1:2] "element_blank" "element"
$ axis.ticks.x : NULL
$ axis.ticks.x.top : NULL
$ axis.ticks.x.bottom : NULL
$ axis.ticks.y : NULL
$ axis.ticks.y.left : NULL
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$ axis.ticks.length : 'simpleUnit' num 2.75points
..- attr(*, "unit")= int 8
$ axis.ticks.length.x : NULL
$ axis.ticks.length.x.top : NULL
$ axis.ticks.length.x.bottom: NULL
$ axis.ticks.length.y : NULL
$ axis.ticks.length.y.left : NULL
$ axis.ticks.length.y.right : NULL
$ axis.line : list()
..- attr(*, "class")= chr [1:2] "element_blank" "element"
$ axis.line.x : NULL
$ axis.line.x.top : NULL
$ axis.line.x.bottom : NULL
$ axis.line.y : NULL
$ axis.line.y.left : NULL
$ axis.line.y.right : NULL
$ legend.background : list()
..- attr(*, "class")= chr [1:2] "element_blank" "element"
$ legend.margin : 'margin' num [1:4] 5.5points 5.5points 5.5points 5.5points
..- attr(*, "unit")= int 8
$ legend.spacing : 'simpleUnit' num 11points
..- attr(*, "unit")= int 8
$ legend.spacing.x : NULL
$ legend.spacing.y : NULL
$ legend.key : list()
..- attr(*, "class")= chr [1:2] "element_blank" "element"
$ legend.key.size : 'simpleUnit' num 1.2lines
..- attr(*, "unit")= int 3
$ legend.key.height : NULL
$ legend.key.width : NULL
$ legend.text :List of 11
..$ family : NULL
..$ face : NULL
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..$ size : 'rel' num 0.8
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$ legend.text.align : NULL
$ legend.title :List of 11
..$ family : NULL
..$ face : NULL
..$ colour : NULL
..$ size : NULL
..$ hjust : num 0
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..$ margin : NULL
..$ debug : NULL
..$ inherit.blank: logi TRUE
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$ legend.position : chr "right"
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$ legend.justification : chr "center"
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$ legend.box.just : NULL
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..- attr(*, "unit")= int 8
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..- attr(*, "class")= chr [1:2] "element_blank" "element"
$ panel.border : list()
..- attr(*, "class")= chr [1:2] "element_blank" "element"
$ panel.spacing : 'simpleUnit' num 5.5points
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$ panel.spacing.x : NULL
$ panel.spacing.y : NULL
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..$ colour : chr "grey92"
..$ size : NULL
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..$ arrow : logi FALSE
..$ inherit.blank: logi TRUE
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$ panel.grid.minor :List of 6
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..$ size : 'rel' num 0.5
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$ panel.grid.major.x : NULL
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$ panel.grid.minor.y : NULL
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$ plot.background : list()
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.. ..- attr(*, "unit")= int 8
..$ debug : NULL
..$ inherit.blank: logi TRUE
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$ plot.subtitle :List of 11
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.. ..- attr(*, "unit")= int 8
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.. ..- attr(*, "unit")= int 8
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..- attr(*, "unit")= int 8
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$ strip.background.y : NULL
$ strip.placement : chr "inside"
$ strip.text :List of 11
..$ family : NULL
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$ strip.text.y :List of 11
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$ strip.switch.pad.grid : 'simpleUnit' num 2.75points
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$ strip.switch.pad.wrap : 'simpleUnit' num 2.75points
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..$ inherit.blank: logi TRUE
..- attr(*, "class")= chr [1:2] "element_text" "element"
- attr(*, "class")= chr [1:2] "theme" "gg"
- attr(*, "complete")= logi TRUE
- attr(*, "validate")= logi TRUE
$coordinates
<ggproto object: Class CoordCartesian, Coord, gg>
aspect: function
backtransform_range: function
clip: on
default: TRUE
distance: function
expand: TRUE
is_free: function
is_linear: function
labels: function
limits: list
modify_scales: function
range: function
render_axis_h: function
render_axis_v: function
render_bg: function
render_fg: function
setup_data: function
setup_layout: function
setup_panel_guides: function
setup_panel_params: function
setup_params: function
train_panel_guides: function
transform: function
super: <ggproto object: Class CoordCartesian, Coord, gg>
$facet
<ggproto object: Class FacetGrid, Facet, gg>
compute_layout: function
draw_back: function
draw_front: function
draw_labels: function
draw_panels: function
finish_data: function
init_scales: function
map_data: function
params: list
setup_data: function
setup_params: function
shrink: TRUE
train_scales: function
vars: function
super: <ggproto object: Class FacetGrid, Facet, gg>
$plot_env
<environment: 0x5646caf28ac0>
$labels
$labels$x
[1] "Log-Ratio Value"
$labels$y
[1] "coord"
$labels$xmin
[1] ".lower"
$labels$xmax
[1] ".upper"
$guides
$guides$colour
$title
[1] "Credible\nInterval"
$title.position
NULL
$title.theme
NULL
$title.hjust
NULL
$title.vjust
NULL
$label
[1] TRUE
$label.position
NULL
$label.theme
NULL
$label.hjust
NULL
$label.vjust
NULL
$keywidth
NULL
$keyheight
NULL
$direction
NULL
$override.aes
named list()
$nrow
NULL
$ncol
NULL
$byrow
[1] FALSE
$reverse
[1] FALSE
$order
[1] 0
$available_aes
[1] "any"
$name
[1] "legend"
attr(,"class")
[1] "guide" "legend"
attr(,"class")
[1] "gg" "ggplot"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 102 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-pibble.R:60:3): optim sylvester gets same result ──────────────
plain > sylv not equal to TRUE.
1 element mismatch
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 102 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: installed package size
Result: NOTE
installed size is 36.9Mb
sub-directories of 1Mb or more:
libs 35.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘phyloseq’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64