CRAN Package Check Results for Maintainer ‘Louis Ranjard <l.ranjard at auckland.ac.nz>’

Last updated on 2022-04-24 03:52:58 CEST.

Package NOTE
phyloland 12

Package phyloland

Current CRAN status:

Version: 1.3
Check: R code for possible problems
Result: NOTE
    PLD_interface: no visible global function definition for 'read.table'
    PLD_interface: no visible global function definition for 'write.table'
    PLD_loc_mrca: no visible global function definition for 'barplot'
    PLD_plot_stat_mig: no visible global function definition for 'density'
    PLD_plot_stat_mig: no visible global function definition for 'rainbow'
    PLD_plot_stat_mig: no visible global function definition for 'lines'
    PLD_plot_stat_mig: no visible global function definition for 'legend'
    PLD_plot_trees: no visible global function definition for 'par'
    break_node_height_tie: no visible global function definition for
     'qnorm'
    break_node_height_tie: no visible global function definition for
     'runif'
    break_node_height_tie: no visible global function definition for
     'pnorm'
    effSaSize: no visible global function definition for 'acf'
    effSaSize: no visible global function definition for 'sd'
    mcmc_phyloland: no visible global function definition for 'write.table'
    mcmc_phyloland: no visible global function definition for 'par'
    mcmc_phyloland: no visible global function definition for 'barplot'
    mcmc_phyloland: no visible global function definition for 'hist'
    mcmc_phyloland: no visible global function definition for 'title'
    mcmc_phyloland: no visible global function definition for 'runif'
    read_loc: no visible global function definition for 'read.table'
    read_space: no visible global function definition for 'read.table'
    sigma_upperlim: no visible global function definition for 'pnorm'
    space_dist: no visible global function definition for 'dist'
    stat_phyloland: no visible global function definition for 'density'
    stat_phyloland: no visible global function definition for 'quantile'
    Undefined global functions or variables:
     acf barplot density dist hist legend lines par pnorm qnorm quantile
     rainbow read.table runif sd title write.table
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "barplot", "hist", "legend", "lines", "par",
     "title")
     importFrom("stats", "acf", "density", "dist", "pnorm", "qnorm",
     "quantile", "runif", "sd")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3
Check: compiled code
Result: NOTE
    File ‘phyloland/libs/phyloland.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc