CRAN Package Check Results for Maintainer Liam J. Revell <liam.revell at umb.edu>

CRAN Package Check Results for Maintainer ‘Liam J. Revell <liam.revell at umb.edu>’

Last updated on 2022-04-24 03:52:58 CEST.

Package	NOTE	OK
learnPopGen		12
phytools		12
Rphylip	12

Package Rphylip

Current CRAN status: NOTE: 12

Version: 0.1-23
Check: R code for possible problems
Result: NOTE
    Rclique: no visible global function definition for 'hasArg'
    Rconsense: no visible global function definition for 'hasArg'
    Rcontml: no visible global function definition for 'hasArg'
    Rcontrast: no visible global function definition for 'hasArg'
    Rcontrast: no visible global function definition for 'pchisq'
    Rdnacomp: no visible global function definition for 'hasArg'
    Rdnadist: no visible global function definition for 'hasArg'
    Rdnadist: no visible global function definition for 'as.dist'
    Rdnainvar: no visible global function definition for 'hasArg'
    Rdnaml: no visible global function definition for 'hasArg'
    Rdnapars: no visible global function definition for 'hasArg'
    Rdnapenny: no visible global function definition for 'hasArg'
    Rdollop: no visible global function definition for 'hasArg'
    Rdolpenny: no visible global function definition for 'hasArg'
    Rfitch: no visible global function definition for 'hasArg'
    Rgendist: no visible global function definition for 'hasArg'
    Rgendist: no visible global function definition for 'as.dist'
    Rkitsch: no visible global function definition for 'hasArg'
    Rmix: no visible global function definition for 'hasArg'
    Rneighbor: no visible global function definition for 'hasArg'
    Rpars: no visible global function definition for 'hasArg'
    Rpenny: no visible global function definition for 'hasArg'
    Rproml: no visible global function definition for 'hasArg'
    Rprotdist: no visible global function definition for 'hasArg'
    Rprotdist: no visible global function definition for 'as.dist'
    Rprotpars: no visible global function definition for 'hasArg'
    Rrestdist: no visible global function definition for 'hasArg'
    Rrestdist : Rgendist: no visible global function definition for
     'hasArg'
    Rrestdist : Rgendist: no visible global function definition for
     'as.dist'
    Rrestdist: no visible global function definition for 'as.dist'
    Rrestml: no visible global function definition for 'hasArg'
    Rseqboot: no visible global function definition for 'hasArg'
    Rthreshml: no visible global function definition for 'hasArg'
    Rtreedist: no visible global function definition for 'hasArg'
    Rtreedist: no visible global function definition for 'read.table'
    Rtreedist: no visible global function definition for 'setNames'
    as.rest.data: no visible global function definition for 'setNames'
    as.rest.data: no visible global function definition for 'hasArg'
    opt.Rdnaml: no visible global function definition for 'hasArg'
    opt.Rdnaml: no visible global function definition for 'optim'
    read.multi.dna: no visible binding for global variable 'read.dna'
    read.phylip.data: no visible global function definition for 'read.dna'
    read.protein: no visible global function definition for 'setNames'
    Undefined global functions or variables:
     as.dist hasArg optim pchisq read.dna read.table setNames
    Consider adding
     importFrom("methods", "hasArg")
     importFrom("stats", "as.dist", "optim", "pchisq", "setNames")
     importFrom("utils", "read.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.1-23
Check: R code for possible problems
Result: NOTE
    Rclique: no visible global function definition for 'hasArg'
    Rconsense: no visible global function definition for 'hasArg'
    Rcontml: no visible global function definition for 'hasArg'
    Rcontrast: no visible global function definition for 'hasArg'
    Rcontrast: no visible global function definition for 'pchisq'
    Rdnacomp: no visible global function definition for 'hasArg'
    Rdnadist: no visible global function definition for 'hasArg'
    Rdnadist: no visible global function definition for 'as.dist'
    Rdnainvar: no visible global function definition for 'hasArg'
    Rdnaml: no visible global function definition for 'hasArg'
    Rdnapars: no visible global function definition for 'hasArg'
    Rdnapenny: no visible global function definition for 'hasArg'
    Rdollop: no visible global function definition for 'hasArg'
    Rdolpenny: no visible global function definition for 'hasArg'
    Rfitch: no visible global function definition for 'hasArg'
    Rgendist: no visible global function definition for 'hasArg'
    Rgendist: no visible global function definition for 'as.dist'
    Rkitsch: no visible global function definition for 'hasArg'
    Rmix: no visible global function definition for 'hasArg'
    Rneighbor: no visible global function definition for 'hasArg'
    Rpars: no visible global function definition for 'hasArg'
    Rpenny: no visible global function definition for 'hasArg'
    Rproml: no visible global function definition for 'hasArg'
    Rprotdist: no visible global function definition for 'hasArg'
    Rprotdist: no visible global function definition for 'as.dist'
    Rprotpars: no visible global function definition for 'hasArg'
    Rrestdist: no visible global function definition for 'hasArg'
    Rrestdist : Rgendist: no visible global function definition for
     'hasArg'
    Rrestdist : Rgendist: no visible global function definition for
     'as.dist'
    Rrestdist: no visible global function definition for 'as.dist'
    Rrestml: no visible global function definition for 'hasArg'
    Rseqboot: no visible global function definition for 'hasArg'
    Rthreshml: no visible global function definition for 'hasArg'
    Rtreedist: no visible global function definition for 'hasArg'
    Rtreedist: no visible global function definition for 'read.table'
    Rtreedist: no visible global function definition for 'setNames'
    as.rest.data: no visible global function definition for 'setNames'
    as.rest.data: no visible global function definition for 'hasArg'
    findPath: no visible global function definition for 'shortPathName'
    opt.Rdnaml: no visible global function definition for 'hasArg'
    opt.Rdnaml: no visible global function definition for 'optim'
    read.multi.dna: no visible binding for global variable 'read.dna'
    read.phylip.data: no visible global function definition for 'read.dna'
    read.protein: no visible global function definition for 'setNames'
    Undefined global functions or variables:
     as.dist hasArg optim pchisq read.dna read.table setNames
     shortPathName
    Consider adding
     importFrom("methods", "hasArg")
     importFrom("stats", "as.dist", "optim", "pchisq", "setNames")
     importFrom("utils", "read.table", "shortPathName")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64

CRAN Package Check Results for Maintainer ‘Liam J. Revell <liam.revell at umb.edu>’

Package learnPopGen

Package phytools

Package Rphylip