Last updated on 2022-04-24 03:52:58 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| beadarrayFilter | 2 | 10 |
Current CRAN status: ERROR: 2, NOTE: 10
Version: 1.1.0
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
'RColorBrewer' 'beadarray'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: R code for possible problems
Result: NOTE
beadtypeFilter: no visible global function definition for 'na.omit'
beadtypeFilter: no visible global function definition for 'exprs'
beadtypeFilter: no visible global function definition for 'se.exprs'
beadtypeFilter: no visible global function definition for 'beadNum'
beadtypeFilter: no visible global function definition for 'fData'
emCDF: no visible global function definition for 'brewer.pal'
emCDF: no visible global function definition for 'ecdf'
emCDF: no visible global function definition for 'legend'
emCDF: no visible global function definition for 'lines'
emCDF: no visible global function definition for 'text'
emCDF: no visible global function definition for 'reshape'
iccFun : <anonymous>: no visible global function definition for
'quantile'
varianceplot: no visible global function definition for 'reshape'
varianceplot: no visible global function definition for 'points'
varianceplot: no visible global function definition for 'legend'
Undefined global functions or variables:
beadNum brewer.pal ecdf exprs fData legend lines na.omit points
quantile reshape se.exprs text
Consider adding
importFrom("graphics", "legend", "lines", "points", "text")
importFrom("stats", "ecdf", "na.omit", "quantile", "reshape")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.0
Check: Rd line widths
Result: NOTE
Rd file 'iccFun.Rd':
\examples lines wider than 100 characters:
aaa<-na.omit(data.frame(I(rownames(exprs(exampleSummaryDataNorm))),exprs(exampleSummaryDataNorm)))[1:40,]
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'beadarrayExampleData', 'lumi'
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘beadarrayFilter-Ex.R’ failed
The error most likely occurred in:
> ### Name: MLM.beadarray
> ### Title: Multi-level Mixed model
> ### Aliases: MLM.beadarray
> ### Keywords: differential expression
>
> ### ** Examples
>
> require(beadarrayExampleData)
Loading required package: beadarrayExampleData
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘beadarrayExampleData’
> data(exampleSummaryData)
Warning in data(exampleSummaryData) :
data set ‘exampleSummaryData’ not found
> exampleSummaryDatalog2 <- channel(exampleSummaryData, "G")[1:40,]
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'object' in selecting a method for function 'channel': object 'exampleSummaryData' not found
Calls: channel -> .handleSimpleError -> h
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64