Last updated on 2022-04-24 03:52:59 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| motifr | 1 | 1 | 10 |
Current CRAN status: ERROR: 1, NOTE: 1, OK: 10
Version: 1.0.0
Check: Rd cross-references
Result: NOTE
Undeclared package ‘graphlayouts’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [30s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(motifr)
> library(reticulate)
>
> test_check("motifr")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 72 ]
== Failed tests ================================================================
-- Error (test-core.R:43:3): io_undirected_dummy_net_issue#27 ------------------
<Rcpp::exception/C++Error/error/condition>
Error in `py_call_impl(callable, dots$args, dots$keywords)`: TypeError: 'float' object cannot be interpreted as an integer
Detailed traceback:
File "C:\Users\CRAN\AppData\Local\R-MINI~1\envs\R-RETI~1\lib\site-packages\sma\rbridge.py", line 133, in distributionMotifsAutoR
partial, total = sma.distributionMotifsAuto(G, *motifs, model = model, level = level)
File "C:\Users\CRAN\AppData\Local\R-MINI~1\envs\R-RETI~1\lib\site-packages\sma\analyse_distribution.py", line 120, in distributionMotifsAuto
expectations = expectedMultiMotifs(G, *arities, roles = roles)
File "C:\Users\CRAN\AppData\Local\R-MINI~1\envs\R-RETI~1\lib\site-packages\sma\analyse_distribution.py", line 44, in expectedMultiMotifs
return motif_info.expectations(G, *positions, **kwargs)
File "C:\Users\CRAN\AppData\Local\R-MINI~1\envs\R-RETI~1\lib\site-packages\sma\analyse_distribution.py", line 166, in expected3Motifs
d = sma.densityMatrix(G)
File "C:\Users\CRAN\AppData\Local\R-MINI~1\envs\R-RETI~1\lib\site-packages\sma\analyse.py", line 708, in densityMatrix
v = sma.edgesCountMatrix(G)
File "C:\Users\CRAN\AppData\Local\R-MINI~1\envs\R-RETI~1\lib\site-packages\sma\analyse.py", line 813, in edgesCountMatrix
res = numpy.zeros((nTypes, nTypes), dtype=int)
Backtrace:
x
1. +-reticulate::py_suppress_warnings(motif_summary(ml_net27, lvl_attr = "lvl")) at test-core.R:43:2
2. | +-base::with(warnings$catch_warnings(), expr)
3. | \-reticulate:::with.python.builtin.object(...)
4. | +-base::tryCatch(...)
5. | | \-base tryCatchList(expr, classes, parentenv, handlers)
6. | \-base::force(expr)
7. \-motifr::motif_summary(ml_net27, lvl_attr = "lvl")
8. \-motifr::motifs_distribution(...)
9. \-pkg.env$sma$distributionMotifsAutoR(...)
10. \-reticulate:::py_call_impl(callable, dots$args, dots$keywords)
-- Error (test-count_motifs.R:101:3): exemplify_motif --------------------------
<Rcpp::exception/C++Error/error/condition>
Error in `py_call_impl(callable, dots$args, dots$keywords)`: StopIteration:
Detailed traceback:
File "C:\Users\CRAN\AppData\Local\R-MINI~1\envs\R-RETI~1\lib\site-packages\sma\analyse_frontend.py", line 220, in exemplifyMotif
return next(source & selector)
File "C:\Users\CRAN\AppData\Local\R-MINI~1\envs\R-RETI~1\lib\site-packages\sma\iterate.py", line 54, in __next__
return self.it.__next__()
Backtrace:
x
1. +-testthat::expect_null(...) at test-count_motifs.R:101:2
2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
3. | \-rlang::eval_bare(expr, quo_get_env(quo))
4. \-motifr::exemplify_motif(motifr::tidygraph_dummy_net, "1,2[I.B]")
5. \-pkg.env$sma$exemplifyMotif(py_g, motif)
6. \-reticulate:::py_call_impl(callable, dots$args, dots$keywords)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 72 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64