Last updated on 2022-04-24 03:52:30 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 9.22 | 465.85 | 475.07 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 8.99 | 338.02 | 347.01 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 601.41 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 619.02 | ERROR | |||
| r-patched-linux-x86_64 | 1.0.2 | 9.37 | 449.23 | 458.60 | ERROR | |
| r-release-linux-x86_64 | 1.0.2 | 10.25 | 459.22 | 469.47 | OK | |
| r-release-macos-arm64 | 1.0.2 | OK | ||||
| r-release-macos-x86_64 | 1.0.2 | OK | ||||
| r-release-windows-x86_64 | 1.0.2 | 96.00 | 504.00 | 600.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.2 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.2 | 18.00 | 520.00 | 538.00 | OK |
Version: 1.0.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s/0s]
Running 'testthat.R' [292s/329s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(metaumbrella)
>
> test_check("metaumbrella")
Analyzing factor: Pharmacological
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: SSRI
Analyzing factor: SSRI
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
In factor 'Smoking':
- study: 'el-Sami (2005)' contains multiple outcomes
In factor 'Smoking' some studies have multiple outcomes but they are not associated with any within-study correlation (which can be indicated in the 'r' column of the dataset). A value of r = 0.5 is assumed.
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Surgical
Analyzing factor: ADHD
Analyzing factor: ASD
Analyzing factor: dyslexia
Analyzing factor: ID
Analyzing factor: Yoga
Analyzing factor: Aerobic training
Analyzing factor: Resistance training
Analyzing factor: Mindfulness
Analyzing factor: ID
Analyzing factor: Smoking
Analyzing factor: SSRI
Analyzing factor: Yoga
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
== Skipped tests ===============================================================
* On CRAN (52)
== Failed tests ================================================================
-- Error (test-functions_multilevel.R:27:3): agg.data correctly aggregates studies with multiple effect size estimates: SMD --
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
x
1. \-metafor::aggregate.escalc(...) at test-functions_multilevel.R:27:2
-- Error (test-functions_multilevel.R:61:3): agg.data correctly aggregates studies with multiple effect size estimates: OR --
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = paste0(author, year), struct = "ID", weighted = TRUE)`: Processing terminated since k == 0.
Backtrace:
x
1. \-metafor::aggregate.escalc(...) at test-functions_multilevel.R:61:2
-- Error (test-functions_multilevel.R:94:3): agg.data correctly aggregates studies with multiple effect size estimates: RR --
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
x
1. \-metafor::aggregate.escalc(...) at test-functions_multilevel.R:94:2
-- Error (test-functions_multilevel.R:138:3): agg.data correctly aggregates studies with multiple effect size estimates: IRR --
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
x
1. \-metafor::aggregate.escalc(...) at test-functions_multilevel.R:138:2
-- Error (test-functions_multilevel.R:172:3): agg.data correctly aggregates studies with multiple effect size estimates: HR --
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
x
1. \-metafor::aggregate.escalc(...) at test-functions_multilevel.R:172:2
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/1s]
Running ‘testthat.R’ [209s/323s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(metaumbrella)
>
> test_check("metaumbrella")
Analyzing factor: Pharmacological
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: SSRI
Analyzing factor: SSRI
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
In factor 'Smoking':
- study: 'el-Sami (2005)' contains multiple outcomes
In factor 'Smoking' some studies have multiple outcomes but they are not associated with any within-study correlation (which can be indicated in the 'r' column of the dataset). A value of r = 0.5 is assumed.
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Surgical
Analyzing factor: ADHD
Analyzing factor: ASD
Analyzing factor: dyslexia
Analyzing factor: ID
Analyzing factor: Yoga
Analyzing factor: Aerobic training
Analyzing factor: Resistance training
Analyzing factor: Mindfulness
Analyzing factor: ID
Analyzing factor: Smoking
Analyzing factor: SSRI
Analyzing factor: Yoga
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (52)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-functions_multilevel.R:27:3): agg.data correctly aggregates studies with multiple effect size estimates: SMD ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:27:2
── Error (test-functions_multilevel.R:61:3): agg.data correctly aggregates studies with multiple effect size estimates: OR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = paste0(author, year), struct = "ID", weighted = TRUE)`: Processing terminated since k == 0.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:61:2
── Error (test-functions_multilevel.R:94:3): agg.data correctly aggregates studies with multiple effect size estimates: RR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:94:2
── Error (test-functions_multilevel.R:138:3): agg.data correctly aggregates studies with multiple effect size estimates: IRR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:138:2
── Error (test-functions_multilevel.R:172:3): agg.data correctly aggregates studies with multiple effect size estimates: HR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:172:2
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [6m/17m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(metaumbrella)
>
> test_check("metaumbrella")
Analyzing factor: Pharmacological
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: SSRI
Analyzing factor: SSRI
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
In factor 'Smoking':
- study: 'el-Sami (2005)' contains multiple outcomes
In factor 'Smoking' some studies have multiple outcomes but they are not associated with any within-study correlation (which can be indicated in the 'r' column of the dataset). A value of r = 0.5 is assumed.
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Surgical
Analyzing factor: ADHD
Analyzing factor: ASD
Analyzing factor: dyslexia
Analyzing factor: ID
Analyzing factor: Yoga
Analyzing factor: Aerobic training
Analyzing factor: Resistance training
Analyzing factor: Mindfulness
Analyzing factor: ID
Analyzing factor: Smoking
Analyzing factor: SSRI
Analyzing factor: Yoga
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (52)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-functions_multilevel.R:27:3): agg.data correctly aggregates studies with multiple effect size estimates: SMD ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:27:2
── Error (test-functions_multilevel.R:61:3): agg.data correctly aggregates studies with multiple effect size estimates: OR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = paste0(author, year), struct = "ID", weighted = TRUE)`: Processing terminated since k == 0.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:61:2
── Error (test-functions_multilevel.R:94:3): agg.data correctly aggregates studies with multiple effect size estimates: RR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:94:2
── Error (test-functions_multilevel.R:138:3): agg.data correctly aggregates studies with multiple effect size estimates: IRR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:138:2
── Error (test-functions_multilevel.R:172:3): agg.data correctly aggregates studies with multiple effect size estimates: HR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:172:2
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [6m/20m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(metaumbrella)
>
> test_check("metaumbrella")
Analyzing factor: Pharmacological
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: SSRI
Analyzing factor: SSRI
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
In factor 'Smoking':
- study: 'el-Sami (2005)' contains multiple outcomes
In factor 'Smoking' some studies have multiple outcomes but they are not associated with any within-study correlation (which can be indicated in the 'r' column of the dataset). A value of r = 0.5 is assumed.
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Surgical
Analyzing factor: ADHD
Analyzing factor: ASD
Analyzing factor: dyslexia
Analyzing factor: ID
Analyzing factor: Yoga
Analyzing factor: Aerobic training
Analyzing factor: Resistance training
Analyzing factor: Mindfulness
Analyzing factor: ID
Analyzing factor: Smoking
Analyzing factor: SSRI
Analyzing factor: Yoga
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (52)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-functions_multilevel.R:27:3): agg.data correctly aggregates studies with multiple effect size estimates: SMD ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:27:2
── Error (test-functions_multilevel.R:61:3): agg.data correctly aggregates studies with multiple effect size estimates: OR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = paste0(author, year), struct = "ID", weighted = TRUE)`: Processing terminated since k == 0.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:61:2
── Error (test-functions_multilevel.R:94:3): agg.data correctly aggregates studies with multiple effect size estimates: RR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:94:2
── Error (test-functions_multilevel.R:138:3): agg.data correctly aggregates studies with multiple effect size estimates: IRR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:138:2
── Error (test-functions_multilevel.R:172:3): agg.data correctly aggregates studies with multiple effect size estimates: HR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:172:2
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/1s]
Running ‘testthat.R’ [279s/320s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(metaumbrella)
>
> test_check("metaumbrella")
Analyzing factor: Pharmacological
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: ASD
Analyzing factor: SSRI
Analyzing factor: SSRI
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
Analyzing factor: Smoking
In factor 'Smoking':
- study: 'el-Sami (2005)' contains multiple outcomes
In factor 'Smoking' some studies have multiple outcomes but they are not associated with any within-study correlation (which can be indicated in the 'r' column of the dataset). A value of r = 0.5 is assumed.
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
Analyzing factor: Surgical
Analyzing factor: ADHD
Analyzing factor: ASD
Analyzing factor: dyslexia
Analyzing factor: ID
Analyzing factor: Yoga
Analyzing factor: Aerobic training
Analyzing factor: Resistance training
Analyzing factor: Mindfulness
Analyzing factor: ID
Analyzing factor: Smoking
Analyzing factor: SSRI
Analyzing factor: Yoga
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: ADHD
Analyzing factor: Pharmacological
Analyzing factor: Pharmacological
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (52)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-functions_multilevel.R:27:3): agg.data correctly aggregates studies with multiple effect size estimates: SMD ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:27:2
── Error (test-functions_multilevel.R:61:3): agg.data correctly aggregates studies with multiple effect size estimates: OR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = paste0(author, year), struct = "ID", weighted = TRUE)`: Processing terminated since k == 0.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:61:2
── Error (test-functions_multilevel.R:94:3): agg.data correctly aggregates studies with multiple effect size estimates: RR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:94:2
── Error (test-functions_multilevel.R:138:3): agg.data correctly aggregates studies with multiple effect size estimates: IRR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:138:2
── Error (test-functions_multilevel.R:172:3): agg.data correctly aggregates studies with multiple effect size estimates: HR ──
Error in `metafor::aggregate.escalc(subset(df.agg.mfr, multiple_es == "groups"),
cluster = author, struct = "ID", weighted = TRUE)`: No missing values allowed in 'cluster' variable.
Backtrace:
▆
1. └─metafor::aggregate.escalc(...) at test-functions_multilevel.R:172:2
[ FAIL 5 | WARN 0 | SKIP 52 | PASS 530 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64