Last updated on 2022-04-24 03:53:00 CEST.
| Package | NOTE |
|---|---|
| CHCN | 12 |
| crn | 12 |
| MATTOOLS | 12 |
Current CRAN status:
Version: 1.5
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to 'RCurl' which was already attached by Depends.
Please remove these calls from your code.
Packages in Depends field not imported from:
'RCurl' 'bitops' 'methods'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.5
Check: R code for possible problems
Result: NOTE
createDataset: no visible global function definition for 'read.csv'
createInventory: no visible global function definition for 'read.csv'
downloadMaster: no visible global function definition for
'getURLContent'
downloadMaster: no visible global function definition for 'read.csv'
downloadMaster: no visible global function definition for 'write.csv'
getMissingScrape: no visible global function definition for 'read.csv'
readLocalMaster: no visible global function definition for 'read.csv'
readMonthlyCsv: no visible global function definition for 'read.csv'
scrapeToCsv: no visible global function definition for 'download.file'
writeData: no visible global function definition for 'write.csv'
writeGhcn: no visible global function definition for 'write.table'
writeInventory: no visible global function definition for 'write.table'
writeMonthlyStations: no visible global function definition for
'read.csv'
writeMonthlyStations: no visible global function definition for
'write.csv'
Undefined global functions or variables:
download.file getURLContent read.csv write.csv write.table
Consider adding
importFrom("utils", "download.file", "read.csv", "write.csv",
"write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Current CRAN status:
Version: 1.1
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to 'RCurl' which was already attached by Depends.
Please remove these calls from your code.
Packages in Depends field not imported from:
'RCurl' 'chron'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1
Check: R code for possible problems
Result: NOTE
collateDaily: no visible global function definition for 'read.table'
collateDaily: no visible global function definition for 'write.table'
collateHourly: no visible global function definition for 'read.table'
collateHourly: no visible global function definition for 'write.table'
downloadCRN: no visible global function definition for 'download.file'
getUrlsCRN: no visible global function definition for 'getURL'
writeDataset: no visible global function definition for 'read.table'
writeDataset: no visible global function definition for 'write.table'
Undefined global functions or variables:
download.file getURL read.table write.table
Consider adding
importFrom("utils", "download.file", "read.table", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1
Check: Rd line widths
Result: NOTE
Rd file 'downloadCRN.Rd':
\usage lines wider than 90 characters:
downloadCRN(url = CRN.DAILY.URL, directory = DAILY_DIR, years = seq(from = 2000, to = 2011, by = 1))
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status:
Version: 1.1
Check: R code for possible problems
Result: NOTE
Found an obsolete/platform-specific call in the following functions:
'mat.plot.mc' 'mat.plot.recon' 'mat.plotjump' 'mat.plotroc'
Found the platform-specific device:
'windows'
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
mat.ROCcalc: no visible global function definition for 'wilcox.test'
mat.fossavg: no visible binding for global variable 'sd'
mat.jump: no visible global function definition for 'cor'
mat.mc: no visible global function definition for 'approx'
mat.plot.mc: no visible global function definition for 'par'
mat.plot.mc: no visible global function definition for 'hist'
mat.plot.mc: no visible global function definition for 'text'
mat.plot.mc: no visible global function definition for 'quantile'
mat.plot.mc: no visible global function definition for 'median'
mat.plot.mc: no visible global function definition for 'var'
mat.plot.mc: no visible global function definition for 'lines'
mat.plot.mc: no visible global function definition for 'segments'
mat.plot.recon: no visible global function definition for 'par'
mat.plot.recon: no visible global function definition for 'lines'
mat.plot.recon: no visible global function definition for 'abline'
mat.plot.recon: no visible global function definition for 'text'
mat.plotjump: no visible global function definition for 'par'
mat.plotjump: no visible global function definition for 'text'
mat.plotroc: no visible global function definition for 'dev.cur'
mat.plotroc: no visible global function definition for 'layout'
mat.plotroc: no visible global function definition for 'layout.show'
mat.plotroc: no visible global function definition for 'dev.set'
mat.plotroc: no visible global function definition for 'hist'
mat.plotroc: no visible global function definition for 'par'
mat.plotroc: no visible global function definition for 'arrows'
mat.plotroc: no visible global function definition for 'text'
mat.plotroc: no visible global function definition for 'abline'
mat.plotroc: no visible global function definition for 'points'
mat.plotroc: no visible global function definition for 'barplot'
mat.plotroc: no visible global function definition for 'polygon'
Undefined global functions or variables:
abline approx arrows barplot cor dev.cur dev.set hist layout
layout.show lines median par points polygon quantile sd segments text
var wilcox.test
Consider adding
importFrom("grDevices", "dev.cur", "dev.set")
importFrom("graphics", "abline", "arrows", "barplot", "hist", "layout",
"layout.show", "lines", "par", "points", "polygon",
"segments", "text")
importFrom("stats", "approx", "cor", "median", "quantile", "sd", "var",
"wilcox.test")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1
Check: Rd line widths
Result: NOTE
Rd file 'mat.dissim.Rd':
\usage lines wider than 90 characters:
mat.dissim(inFossil, inModern, llMod = c(), modTaxa = c(), llFoss = c(), fosTaxa = c(), numAnalogs = 1, counts = T, sitenames = 1:lengt ... [TRUNCATED]
Rd file 'mat.fossavg.Rd':
\usage lines wider than 90 characters:
mat.fossavg(dObj, modEnvCol, fossEnvCol = 0, fossCols = 0, cutoff = 0, distance = -1, wmethod = "none", numanalogs = length(dObj$positi ... [TRUNCATED]
Rd file 'mat.jumprecon.Rd':
\usage lines wider than 90 characters:
mat.jumprecon(dObj, modEnvCol, fossEnvCol, cutoff = 0, alpha = NULL, distance = -1, numanalogs = length(dObj$position[, 1]))
Rd file 'mat.mc.Rd':
\usage lines wider than 90 characters:
mat.mc(inModern, modTaxa = c(NULL, NULL), probs = c(0.05, 0.025, 0.01, 0.001), freqint = seq(0, 2, 0.02), sampleSize = length(inModern[ ... [TRUNCATED]
Rd file 'mat.roc.Rd':
\usage lines wider than 90 characters:
mat.roc(inModern, modTaxa = c(), colClasses = NULL, numAnalogs = 2, rocEvalSeq = seq(0, 2, 0.05), counts = F, aucmethod = "trap")
Rd file 'mat.roc.allpair.Rd':
\usage lines wider than 90 characters:
mat.roc.allpair(inModern, modTaxa = c(), colClasses = NULL, numAnalogs = 2, rocEvalSeq = seq(0, 2, 0.05), counts = F, aucmethod = "trap ... [TRUNCATED]
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1
Check: R code for possible problems
Result: NOTE
mat.ROCcalc: no visible global function definition for ‘wilcox.test’
mat.fossavg: no visible binding for global variable ‘sd’
mat.jump: no visible global function definition for ‘cor’
mat.mc: no visible global function definition for ‘approx’
mat.plot.mc: no visible global function definition for ‘par’
mat.plot.mc: no visible global function definition for ‘hist’
mat.plot.mc: no visible global function definition for ‘text’
mat.plot.mc: no visible global function definition for ‘quantile’
mat.plot.mc: no visible global function definition for ‘median’
mat.plot.mc: no visible global function definition for ‘var’
mat.plot.mc: no visible global function definition for ‘lines’
mat.plot.mc: no visible global function definition for ‘segments’
mat.plot.recon: no visible global function definition for ‘par’
mat.plot.recon: no visible global function definition for ‘lines’
mat.plot.recon: no visible global function definition for ‘abline’
mat.plot.recon: no visible global function definition for ‘text’
mat.plotjump: no visible global function definition for ‘par’
mat.plotjump: no visible global function definition for ‘text’
mat.plotroc: no visible global function definition for ‘dev.cur’
mat.plotroc: no visible global function definition for ‘layout’
mat.plotroc: no visible global function definition for ‘layout.show’
mat.plotroc: no visible global function definition for ‘dev.set’
mat.plotroc: no visible global function definition for ‘hist’
mat.plotroc: no visible global function definition for ‘par’
mat.plotroc: no visible global function definition for ‘arrows’
mat.plotroc: no visible global function definition for ‘text’
mat.plotroc: no visible global function definition for ‘abline’
mat.plotroc: no visible global function definition for ‘points’
mat.plotroc: no visible global function definition for ‘barplot’
mat.plotroc: no visible global function definition for ‘polygon’
Undefined global functions or variables:
abline approx arrows barplot cor dev.cur dev.set hist layout
layout.show lines median par points polygon quantile sd segments text
var wilcox.test
Consider adding
importFrom("grDevices", "dev.cur", "dev.set")
importFrom("graphics", "abline", "arrows", "barplot", "hist", "layout",
"layout.show", "lines", "par", "points", "polygon",
"segments", "text")
importFrom("stats", "approx", "cor", "median", "quantile", "sd", "var",
"wilcox.test")
to your NAMESPACE file.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1
Check: R code for possible problems
Result: NOTE
mat.ROCcalc: no visible global function definition for 'wilcox.test'
mat.fossavg: no visible binding for global variable 'sd'
mat.jump: no visible global function definition for 'cor'
mat.mc: no visible global function definition for 'approx'
mat.plot.mc: no visible global function definition for 'windows'
mat.plot.mc: no visible global function definition for 'par'
mat.plot.mc: no visible global function definition for 'hist'
mat.plot.mc: no visible global function definition for 'text'
mat.plot.mc: no visible global function definition for 'quantile'
mat.plot.mc: no visible global function definition for 'median'
mat.plot.mc: no visible global function definition for 'var'
mat.plot.mc: no visible global function definition for 'lines'
mat.plot.mc: no visible global function definition for 'segments'
mat.plot.recon: no visible global function definition for 'windows'
mat.plot.recon: no visible global function definition for 'par'
mat.plot.recon: no visible global function definition for 'lines'
mat.plot.recon: no visible global function definition for 'abline'
mat.plot.recon: no visible global function definition for 'text'
mat.plotjump: no visible global function definition for 'windows'
mat.plotjump: no visible global function definition for 'par'
mat.plotjump: no visible global function definition for 'text'
mat.plotroc: no visible global function definition for 'windows'
mat.plotroc: no visible global function definition for 'dev.cur'
mat.plotroc: no visible global function definition for 'layout'
mat.plotroc: no visible global function definition for 'layout.show'
mat.plotroc: no visible global function definition for 'dev.set'
mat.plotroc: no visible global function definition for 'hist'
mat.plotroc: no visible global function definition for 'par'
mat.plotroc: no visible global function definition for 'arrows'
mat.plotroc: no visible global function definition for 'text'
mat.plotroc: no visible global function definition for 'abline'
mat.plotroc: no visible global function definition for 'points'
mat.plotroc: no visible global function definition for 'barplot'
mat.plotroc: no visible global function definition for 'polygon'
Undefined global functions or variables:
abline approx arrows barplot cor dev.cur dev.set hist layout
layout.show lines median par points polygon quantile sd segments text
var wilcox.test windows
Consider adding
importFrom("grDevices", "dev.cur", "dev.set", "windows")
importFrom("graphics", "abline", "arrows", "barplot", "hist", "layout",
"layout.show", "lines", "par", "points", "polygon",
"segments", "text")
importFrom("stats", "approx", "cor", "median", "quantile", "sd", "var",
"wilcox.test")
to your NAMESPACE file.
Flavors: r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64